Mercurial > repos > tyty > structurefold

comparison reactivity_cal/parse_dis_react.py @ 63:c1f1b552c1b8 draft

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Uploaded
author tyty
date Tue, 18 Nov 2014 15:54:11 -0500
parents 7a8ddf1819b1
children
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62:58df1060fea1 63:c1f1b552c1b8
1 #!/usr/bin/env python
2 # -*- coding: utf-8 -*-
3 import sys
4
5 def parse_dist(in_file):
6 result = []
7 distribution = {}
8 name = []
9 f = open(in_file)
10 flag = 0
11 for aline in f.readlines():
12 line = aline.strip()
13 dis = line.strip()
14 dist = dis.split('\t')
15 if len(dist) > 0:
16 if len(dist) == 1:
17 if dist[0].strip().find('coverage')==-1:
18 if flag == 0:
19 name.append(line)
20 flag = 1
21 t_name = line
22 else:
23 distribution[t_name] = 'null'
24 name.append(line)
25 flag = 1
26 t_name = line
27 else:
28 distri = []
29 for i in range(0, len(dist)):
30 distri.append(dist[i].strip())
31 distribution[t_name] = distri
32 flag = 0
33 result.append(name)
34 result.append(distribution)
35 f.close()
36 return result
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