# HG changeset patch
# User tyty
# Date 1428863310 14400
# Node ID 87ec0ecdc2afcdf0e7f3bf95b57411aaf06f051c
# Parent  9c57713215bb77c45de484eb087c852ed0213983
Uploaded

diff -r 9c57713215bb -r 87ec0ecdc2af Iterative_mapping/iterative_map.py
--- a/Iterative_mapping/iterative_map.py	Sun Mar 29 01:21:50 2015 -0400
+++ b/Iterative_mapping/iterative_map.py	Sun Apr 12 14:28:30 2015 -0400
@@ -103,10 +103,7 @@
         break
     os.system("rm "+syspathrs+"count"+str(k+1)+".txt")
     k = k+1
-    if type_input == "fasta":
-        os.system("bowtie "+s+"-f "+syspathrs+"ref"+" "+syspathrs+"seq"+str(k)+".fa --quiet -S > "+syspathrs+"map"+str(k)+".sam")
-    if type_input == "fastq":
-        os.system("bowtie "+s+"-q "+syspathrs+"ref"+" "+syspathrs+"seq"+str(k)+".fa --quiet -S > "+syspathrs+"map"+str(k)+".sam")
+    os.system("bowtie "+s+"-f "+syspathrs+"ref"+" "+syspathrs+"seq"+str(k)+".fa --quiet -S > "+syspathrs+"map"+str(k)+".sam")
 
 
 ss = ""