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First commit of old repositories
author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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1 #
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2 #
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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3 # new genestats file
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4 #
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5 intron_emission
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6 0.25 0.25 0.25 0.25 0.1
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7 //
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8 rnd_emission
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9 0.25 0.25 0.25 0.25 0.1
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10 //
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11 splice3 10
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12 ENSE00000673410 TCCCACATAGATCA
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13 ENSE00000673409 TATCCTGCAGTATG
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14 ENSE00000673408 TTTGCTATAGATTA
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15 ENSE00000673407 GGTTTTTCAGTTGC
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16 ENSE00000401072 CTCCCATTAGGGTT
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17 ENSE00000868868 TTATTTCTAGCTGA
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18 ENSE00000401061 CTTTGGTTAGGCAG
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19 ENSE00000673400 GTTCTCCCAGGCCT
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20 ENSE00000673402 TGTTTTATAGGGAT
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21 ENSE00000673403 CTTCTTTCAGAATG
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22 ENSE00000868865 ATTATCTTAGTTTC
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23 ENSE00000662824 ATTTTTTTAGTGGA
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24 ENSE00000662823 TCATTTTTAGGAAC
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25 ENSE00000662822 CAAATTTCAGCCAA
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26 ENSE00000662821 TATTCTACAGGAAG
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27 ENSE00000662820 TATTTGGCAGCCGT
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28 ENSE00000662819 TTTCTTACAGATTA
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29 ENSE00000814444 ATTTTTAAAGCATT
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30 ENSE00000814445 TTTTTTCCAGGGAC
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31 ENSE00000814446 CTCTGTCTAGTTTC
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32 ENSE00000814447 CTGCTTTTAGTCTC
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33 ENSE00000814448 TGGATTTCAGTTTC
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34 ENSE00000789672 TGGCATTTAGAAAT
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35 ENSE00000789671 TTGTCCTCAGATTT
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36 ENSE00000814451 TTTCGGGTAGATCA
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37 ENSE00000814452 TTGCTCCTAGGTTT
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38 ENSE00000789668 TTCCCTACAGGCGA
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39 ENSE00000789652 TTCTTTGCAGTTAT
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40 ENSE00000789653 ATTCATTTAGGCAG
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41 ENSE00000789654 TTTGGATCAGGATA
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42 ENSE00000789655 TTTATTTTAGGAAT
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43 ENSE00000789656 CCCTTCCCAGCAAG
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44 ENSE00000789657 TACATGTAAGACCT
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45 ENSE00000789658 TTCCCTGCAGGATA
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46 ENSE00000789659 TTTTGATTAGGATG
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47 ENSE00000789660 TATATTGCAGATAT
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48 ENSE00000789661 CTTTTTCCAGATAA
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49 ENSE00000789662 TTTATTTCAGCTGG
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50 ENSE00000450960 TGTCCTTCAGAACA
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51 ENSE00000789663 TGTTTCTTAGGTAG
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52 ENSE00000789664 ACCTCTGTAGGCAG
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53 ENSE00000789665 GTTCTTTTAGGACA
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54 ENSE00000789666 TTTTTAATAGGGAA
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55 ENSE00000450963 TCCCTGGCAGACTG
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56 ENSE00000813771 AACTTTTCAGCTCT
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57 ENSE00000813770 TATTACACAGGATT
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58 //
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59 splice5 5
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60 ENSE00000673410 ACTGGTGAGTCCTT
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61 ENSE00000673409 TGAGGTAAGCCTGA
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62 ENSE00000673408 TACGGTAAGTGGTA
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63 ENSE00000673407 TGAAGTAAGGTGCC
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64 ENSE00000401072 CCAAGTAAGTTTTT
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65 ENSE00000868868 TAAGGTGCGTTCAT
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66 ENSE00000401061 AAAAGTAAGTAAAT
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67 ENSE00000673400 AAACGTAAGTTGGA
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68 ENSE00000673402 TGAGGTATGTAAGA
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69 ENSE00000673403 TCAGGTATGACATT
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70 ENSE00000868865 CTATGTGAGTTATG
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71 ENSE00000662824 GTAAGTTATAAGAA
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72 ENSE00000662823 CCATGTAAGTGGTA
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73 ENSE00000662822 TTAGGTAGGTACTA
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74 ENSE00000662821 TCAGGTAGGTACAT
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75 ENSE00000662820 TCAGGTACAGTGAA
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76 ENSE00000662819 CGAGGTATGCAACT
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77 ENSE00000814444 CAGAGTAAGTAACC
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78 ENSE00000814445 AGAGGTAAGCCAGG
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79 ENSE00000814446 GATGGTAAGATGAT
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80 ENSE00000814447 CAGGGTGAGTTGGA
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81 ENSE00000814448 TCAGGTGAGGGCAT
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82 ENSE00000789672 TTAAGTAAGTTCAG
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83 ENSE00000789671 AAAGGTGAATGCTT
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84 ENSE00000814451 ACAGGTCAGAGGCC
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85 ENSE00000814452 GAAGGTAAGAATTA
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86 ENSE00000789668 TGAGGTGAGTACTT
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87 ENSE00000789652 TTAAGTAAGTTTGT
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88 ENSE00000789653 ACAGGTAAAATTTG
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89 ENSE00000789654 TAAGGTAAGGCTTT
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90 ENSE00000789655 ACAGGTAAGAAGAA
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91 ENSE00000789656 TTAGGTAAGCTTCA
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92 //