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annotate orthologs/evolmap_output_exclude.xml @ 0:5b9a38ec4a39 draft default tip

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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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1 <tool id="evolmap_output_exclude" name="EvolMAP Output Species Exclude">
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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2 <description>Modifies EvolMAP Output to exclude specific species.</description>
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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3 <command interpreter="perl">evolmap_output_exclude.pl $input $speciesList</command>
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4 <inputs>
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5 <param name="input" type="data" format="txt" label="EvolMAP Output generated file" />
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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6 <param name="speciesList" type="text" area="true" size="4x25" label="Species to exclude separated by commas with no space -- example: VolvoxCarteriFNagariensis,CoccomyxaSpC169" />
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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7 </inputs>
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8
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9 <outputs>
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10 <data from_work_dir="output.txt" format="txt" />
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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11 </outputs>
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12
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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13 <help>
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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14 http://labs.eemb.ucsb.edu/oakley/todd/
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15
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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16 Takes the output file of EvolMAP Output tool as input and deletes the user defined species from this file and is ouputted to a new text file.
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17
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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18 Input format:
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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19 Text (txt)
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20
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osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
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21 Output format:
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22 Text (txt)
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23 </help>
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24 </tool>