Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics

comparison orthologs/ucsb_hamster/lib/wisecfg/gene.stat @ 0:5b9a38ec4a39 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
First commit of old repositories
author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:5b9a38ec4a39
1 #
2 # new genestats file
3 #
4 splice3 10
5 ENSE00000673410 TCCCACATAGATCA
6 ENSE00000673409 TATCCTGCAGTATG
7 ENSE00000673408 TTTGCTATAGATTA
8 ENSE00000673407 GGTTTTTCAGTTGC
9 ENSE00000401072 CTCCCATTAGGGTT
10 ENSE00000868868 TTATTTCTAGCTGA
11 ENSE00000401061 CTTTGGTTAGGCAG
12 ENSE00000673400 GTTCTCCCAGGCCT
13 ENSE00000673402 TGTTTTATAGGGAT
14 ENSE00000673403 CTTCTTTCAGAATG
15 ENSE00000868865 ATTATCTTAGTTTC
16 ENSE00000662824 ATTTTTTTAGTGGA
17 ENSE00000662823 TCATTTTTAGGAAC
18 ENSE00000662822 CAAATTTCAGCCAA
19 ENSE00000662821 TATTCTACAGGAAG
20 ENSE00000662820 TATTTGGCAGCCGT
21 ENSE00000662819 TTTCTTACAGATTA
22 ENSE00000814444 ATTTTTAAAGCATT
23 ENSE00000814445 TTTTTTCCAGGGAC
24 ENSE00000814446 CTCTGTCTAGTTTC
25 ENSE00000814447 CTGCTTTTAGTCTC
26 ENSE00000814448 TGGATTTCAGTTTC
27 ENSE00000789672 TGGCATTTAGAAAT
28 ENSE00000789671 TTGTCCTCAGATTT
29 ENSE00000814451 TTTCGGGTAGATCA
30 ENSE00000814452 TTGCTCCTAGGTTT
31 ENSE00000789668 TTCCCTACAGGCGA
32 ENSE00000789652 TTCTTTGCAGTTAT
33 ENSE00000789653 ATTCATTTAGGCAG
34 ENSE00000789654 TTTGGATCAGGATA
35 ENSE00000789655 TTTATTTTAGGAAT
36 ENSE00000789656 CCCTTCCCAGCAAG
37 ENSE00000789657 TACATGTAAGACCT
38 ENSE00000789658 TTCCCTGCAGGATA
39 ENSE00000789659 TTTTGATTAGGATG
40 ENSE00000789660 TATATTGCAGATAT
41 ENSE00000789661 CTTTTTCCAGATAA
42 ENSE00000789662 TTTATTTCAGCTGG
43 ENSE00000450960 TGTCCTTCAGAACA
44 ENSE00000789663 TGTTTCTTAGGTAG
45 ENSE00000789664 ACCTCTGTAGGCAG
46 ENSE00000789665 GTTCTTTTAGGACA
47 ENSE00000789666 TTTTTAATAGGGAA
48 ENSE00000450963 TCCCTGGCAGACTG
49 ENSE00000813771 AACTTTTCAGCTCT
50 ENSE00000813770 TATTACACAGGATT
51 //
52 splice5 5
53 ENSE00000673410 ACTGGTGAGTCCTT
54 ENSE00000673409 TGAGGTAAGCCTGA
55 ENSE00000673408 TACGGTAAGTGGTA
56 ENSE00000673407 TGAAGTAAGGTGCC
57 ENSE00000401072 CCAAGTAAGTTTTT
58 ENSE00000868868 TAAGGTGCGTTCAT
59 ENSE00000401061 AAAAGTAAGTAAAT
60 ENSE00000673400 AAACGTAAGTTGGA
61 ENSE00000673402 TGAGGTATGTAAGA
62 ENSE00000673403 TCAGGTATGACATT
63 ENSE00000868865 CTATGTGAGTTATG
64 ENSE00000662824 GTAAGTTATAAGAA
65 ENSE00000662823 CCATGTAAGTGGTA
66 ENSE00000662822 TTAGGTAGGTACTA
67 ENSE00000662821 TCAGGTAGGTACAT
68 ENSE00000662820 TCAGGTACAGTGAA
69 ENSE00000662819 CGAGGTATGCAACT
70 ENSE00000814444 CAGAGTAAGTAACC
71 ENSE00000814445 AGAGGTAAGCCAGG
72 ENSE00000814446 GATGGTAAGATGAT
73 ENSE00000814447 CAGGGTGAGTTGGA
74 ENSE00000814448 TCAGGTGAGGGCAT
75 ENSE00000789672 TTAAGTAAGTTCAG
76 ENSE00000789671 AAAGGTGAATGCTT
77 ENSE00000814451 ACAGGTCAGAGGCC
78 ENSE00000814452 GAAGGTAAGAATTA
79 ENSE00000789668 TGAGGTGAGTACTT
80 ENSE00000789652 TTAAGTAAGTTTGT
81 ENSE00000789653 ACAGGTAAAATTTG
82 ENSE00000789654 TAAGGTAAGGCTTT
83 ENSE00000789655 ACAGGTAAGAAGAA
84 ENSE00000789656 TTAGGTAAGCTTCA
85 //
86 # A G C T N
87 intron_emission
88 0.25 0.25 0.25 0.25 0.25
89 //
90 polyp_emission
91 0.2 0.2 0.3 0.3 0.25
92 //
93 rnd_emission
94 0.25 0.25 0.25 0.25 0.25
95 //
96 rndcodon
97 AAA 5290.000000
98 AAC 4795.000000
99 AAG 8178.000000
100 AAT 3305.000000
101 ACA 6240.000000
102 ACC 7728.000000
103 ACG 3347.000000
104 ACT 4930.000000
105 AGA 8491.000000
106 AGC 8639.000000
107 AGG 8997.000000
108 AGT 4417.000000
109 ATA 1975.000000
110 ATC 4973.000000
111 ATG 6474.000000
112 ATT 3083.000000
113 CAA 7057.000000
114 CAC 6815.000000
115 CAG 11041.000000
116 CAT 5779.000000
117 CCA 10537.000000
118 CCC 10307.000000
119 CCG 5621.000000
120 CCT 10134.000000
121 CGA 3377.000000
122 CGC 5146.000000
123 CGG 5375.000000
124 CGT 2765.000000
125 CTA 3502.000000
126 CTC 7465.000000
127 CTG 13780.000000
128 CTT 5453.000000
129 GAA 7461.000000
130 GAC 6937.000000
131 GAG 9975.000000
132 GAT 4949.000000
133 GCA 7747.000000
134 GCC 10890.000000
135 GCG 4828.000000
136 GCT 9371.000000
137 GGA 10143.000000
138 GGC 10400.000000
139 GGG 8869.000000
140 GGT 5567.000000
141 GTA 2143.000000
142 GTC 4593.000000
143 GTG 8189.000000
144 GTT 3021.000000
145 TAA 1775.000000
146 TAC 3687.000000
147 TAG 1333.000000
148 TAT 2477.000000
149 TCA 6180.000000
150 TCC 7668.000000
151 TCG 2875.000000
152 TCT 5767.000000
153 TGA 7315.000000
154 TGC 8625.000000
155 TGG 11718.000000
156 TGT 5197.000000
157 TTA 1664.000000
158 TTC 5462.000000
159 TTG 4420.000000
160 TTT 3453.000000
161 //
162
163
164
165
166
167
168
169
170