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comparison orthologs/ucsb_hamster/lib/wisecfg/gon350.bla @ 0:5b9a38ec4a39 draft default tip

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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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comparison
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-1:000000000000 0:5b9a38ec4a39
1 # benner-gonnet matrix
2 # ppam := 350
3 # print (DayhoffM (NewLogPAM1, pam));
4 # DayMatrix(Peptide, pam=350, Simil: max=12.362, min=-3.511, max offdiag=4.155,
5 # del=-18.727-1.396*(k-1))
6 A R N D C Q E G H I L K M F P S T W Y V *
7 1.0 -0.2 0.0 0.0 0.4 0.0 0.1 0.5 -0.4 -0.4 -0.7 -0.1 -0.4 -1.4 0.3 0.6 0.4 -2.4 -1.4 0.0 -3.5
8 -0.2 2.8 0.4 0.2 -1.3 1.0 0.6 -0.4 0.6 -1.5 -1.4 1.8 -1.1 -2.0 -0.4 0.1 0.0 -1.2 -1.2 -1.2 -3.5
9 0.0 0.4 2.0 1.5 -1.1 0.6 0.9 0.5 0.8 -1.8 -1.9 0.7 -1.4 -2.0 -0.3 0.6 0.4 -2.4 -1.0 -1.3 -3.5
10 0.0 0.2 1.5 2.9 -1.9 0.8 1.9 0.4 0.5 -2.4 -2.5 0.6 -1.9 -3.0 -0.2 0.5 0.2 -3.5 -1.8 -1.8 -3.5
11 0.4 -1.3 -1.1 -1.9 9.3 -1.4 -1.7 -1.2 -0.8 -0.5 -0.7 -1.6 -0.4 -0.3 -1.8 0.1 -0.2 -0.4 -0.1 0.2 -3.5
12 0.0 1.0 0.6 0.8 -1.4 1.2 1.1 -0.4 0.7 -1.1 -1.1 1.0 -0.7 -1.6 0.0 0.2 0.1 -1.9 -1.1 -0.9 -3.5
13 0.1 0.6 0.9 1.9 -1.7 1.1 2.0 -0.2 0.4 -1.7 -1.8 0.9 -1.3 -2.5 0.0 0.3 0.1 -2.9 -1.7 -1.2 -3.5
14 0.5 -0.4 0.5 0.4 -1.2 -0.4 -0.2 5.1 -0.7 -2.9 -3.0 -0.4 -2.3 -3.5 -0.7 0.5 -0.5 -3.0 -2.7 -2.1 -3.5
15 -0.4 0.6 0.8 0.5 -0.8 0.7 0.4 -0.7 3.3 -1.3 -1.1 0.5 -0.8 0.1 -0.5 0.0 -0.1 -0.3 1.5 -1.1 -3.5
16 -0.4 -1.5 -1.8 -2.4 -0.5 -1.1 -1.7 -2.9 -1.3 2.7 2.2 -1.3 1.9 1.1 -1.6 -1.1 -0.3 -0.9 -0.1 2.2 -3.5
17 -0.7 -1.4 -1.9 -2.5 -0.7 -1.1 -1.8 -3.0 -1.1 2.2 2.8 -1.4 2.1 1.8 -1.5 -1.3 -0.7 -0.1 0.5 1.6 -3.5
18 -0.1 1.8 0.7 0.6 -1.6 1.0 0.9 -0.4 0.5 -1.3 -1.4 1.8 -0.9 -2.1 -0.2 0.2 0.2 -2.3 -1.4 -1.0 -3.5
19 -0.4 -1.1 -1.4 -1.9 -0.4 -0.7 -1.3 -2.3 -0.8 1.9 2.1 -0.9 2.3 1.4 -1.4 -0.9 -0.4 -0.3 0.2 1.4 -3.5
20 -1.4 -2.0 -2.0 -3.0 -0.3 -1.6 -2.5 -3.5 0.1 1.1 1.8 -2.1 1.4 5.1 -2.5 -1.8 -1.3 3.5 4.2 0.5 -3.5
21 0.3 -0.4 -0.3 -0.2 -1.8 0.0 0.0 -0.7 -0.5 -1.6 -1.5 -0.2 -1.4 -2.5 5.6 0.4 0.2 -3.4 -2.0 -1.1 -3.5
22 0.6 0.1 0.6 0.5 0.1 0.2 0.3 0.5 0.0 -1.1 -1.3 0.2 -0.9 -1.8 0.4 1.0 0.8 -2.2 -1.2 -0.6 -3.5
23 0.4 0.0 0.4 0.2 -0.2 0.1 0.1 -0.5 -0.1 -0.3 -0.7 0.2 -0.4 -1.3 0.2 0.8 1.1 -2.3 -1.2 0.0 -3.5
24 -2.4 -1.2 -2.4 -3.5 -0.4 -1.9 -2.9 -3.0 -0.3 -0.9 -0.1 -2.3 -0.3 3.5 -3.4 -2.2 -2.3 12.4 3.9 -1.4 -3.5
25 -1.4 -1.2 -1.0 -1.8 -0.1 -1.1 -1.7 -2.7 1.5 -0.1 0.5 -1.4 0.2 4.2 -2.0 -1.2 -1.2 3.9 5.7 -0.4 -3.5
26 0.0 -1.2 -1.3 -1.8 0.2 -0.9 -1.2 -2.1 -1.1 2.2 1.6 -1.0 1.4 0.5 -1.1 -0.6 0.0 -1.4 -0.4 2.1 -3.5
27 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 -3.5 1