Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
comparison orthologs/ucsb_hamster/lib/wisecfg/pombe.gf @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
parents | |
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1 # Splice sites and intron regions information for GeneWise-21 | |
2 # Fri May 15 13:20:38 IDT 1998 | |
3 # Created by Mor Amitai (mor@compugen.co.il) | |
4 # dataset : ~/ftp/pub/PomBase/temp/cds_cdna ~/ftp/pub/PomBase/temp/cds_ex | |
5 # Consensi are read from top down. The value, for a sequence, | |
6 # is the number in the line of the first consensus that | |
7 # matches the sequence. | |
8 # Note: the set of sequences that are represented by a consensus | |
9 # are all the sequences that match this consensus and none of the | |
10 # previous consensi | |
11 # | |
12 # the numbers in types 5SS, 3SS, CDS, and the emissions are the number of | |
13 # occurrences of each sequence in the database. | |
14 # In case of a consensus this is the number of occurrences of sequences | |
15 # that are represented by the consensus in the database divided by the | |
16 # number of sequences that are represented by the consensus. | |
17 # *stay_prob is the probability of the transition from the state to itself. | |
18 # No_Spacer_Prob is the probability of transition from Pyrimidine directly | |
19 # to 3SS (no spacer). | |
20 type 5SS | |
21 center 3 | |
22 phase all | |
23 begin consensus | |
24 ---GTA-GT- 0.0869141 | |
25 ---GT----- 0.000821553 | |
26 end consensus | |
27 type 5SS | |
28 center 3 | |
29 phase 0 | |
30 begin consensus | |
31 ---GTA-GT- 0.0371094 | |
32 ---GT----- 0.000356523 | |
33 end consensus | |
34 type 5SS | |
35 center 3 | |
36 phase 1 | |
37 begin consensus | |
38 ---GTA-GT- 0.0292969 | |
39 ---GT----- 0.000294519 | |
40 end consensus | |
41 type 5SS | |
42 center 3 | |
43 phase 2 | |
44 begin consensus | |
45 ---GT----- 0.000488281 | |
46 end consensus | |
47 type 5SS_codon | |
48 phase all | |
49 begin consensus | |
50 AAA 1.864078 | |
51 AAC 0.621359 | |
52 AAG 6.524272 | |
53 AAT 1.864078 | |
54 AAN 2.71845 | |
55 ACA 0.932039 | |
56 ACC 0.310680 | |
57 ACG 1.553398 | |
58 ACT 0.932039 | |
59 ACN 0.932039 | |
60 AGA 1.553398 | |
61 AGC 0.310680 | |
62 AGG 1.553398 | |
63 AGT 1.864078 | |
64 AGN 1.32039 | |
65 ATA 0.932039 | |
66 ATC 0.621359 | |
67 ATG 2.796117 | |
68 ATT 1.553398 | |
69 ATN 1.47573 | |
70 ANA 1.32039 | |
71 ANC 0.46602 | |
72 ANG 3.1068 | |
73 ANT 1.5534 | |
74 ANN 1.61165 | |
75 CAA 1.242718 | |
76 CAC 0.310680 | |
77 CAG 3.417476 | |
78 CAT 0.621359 | |
79 CAN 1.39806 | |
80 CCA 0.310680 | |
81 CCC 0.310680 | |
82 CCG 0.621359 | |
83 CCT 0.310680 | |
84 CCN 0.38835 | |
85 CGA 0.621359 | |
86 CGC 0.310680 | |
87 CGG 1.242718 | |
88 CGT 0.310680 | |
89 CGN 0.621359 | |
90 CTA 0.310680 | |
91 CTC 0.310680 | |
92 CTG 1.864078 | |
93 CTT 0.621359 | |
94 CTN 0.776699 | |
95 CNA 0.621359 | |
96 CNC 0.31068 | |
97 CNG 1.78641 | |
98 CNT 0.46602 | |
99 CNN 0.796117 | |
100 GAA 0.310680 | |
101 GAC 0.621359 | |
102 GAG 3.106796 | |
103 GAT 1.242718 | |
104 GAN 1.32039 | |
105 GCA 0.621359 | |
106 GCC 0.621359 | |
107 GCG 0.310680 | |
108 GCT 0.621359 | |
109 GCN 0.543689 | |
110 GGA 0.310680 | |
111 GGC 0.310680 | |
112 GGG 0.310680 | |
113 GGT 0.310680 | |
114 GGN 0.31068 | |
115 GTA 0.310680 | |
116 GTC 0.310680 | |
117 GTG 0.932039 | |
118 GTT 0.310680 | |
119 GTN 0.46602 | |
120 GNA 0.38835 | |
121 GNC 0.46602 | |
122 GNG 1.16505 | |
123 GNT 0.621359 | |
124 GNN 0.660194 | |
125 TAA 0.621359 | |
126 TAC 0.932039 | |
127 TAG 0.932039 | |
128 TAT 0.621359 | |
129 TAN 0.776699 | |
130 TCA 0.621359 | |
131 TCC 0.310680 | |
132 TCG 0.621359 | |
133 TCT 0.932039 | |
134 TCN 0.621359 | |
135 TGA 0.621359 | |
136 TGC 0.621359 | |
137 TGG 1.242718 | |
138 TGT 0.621359 | |
139 TGN 0.776699 | |
140 TTA 0.621359 | |
141 TTC 0.621359 | |
142 TTG 3.106796 | |
143 TTT 1.864078 | |
144 TTN 1.5534 | |
145 TNA 0.621359 | |
146 TNC 0.621359 | |
147 TNG 1.47573 | |
148 TNT 1.00971 | |
149 TNN 0.932039 | |
150 NAA 1.00971 | |
151 NAC 0.621359 | |
152 NAG 3.49515 | |
153 NAT 1.08738 | |
154 NAN 1.5534 | |
155 NCA 0.621359 | |
156 NCC 0.38835 | |
157 NCG 0.776699 | |
158 NCT 0.699029 | |
159 NCN 0.621359 | |
160 NGA 0.776699 | |
161 NGC 0.38835 | |
162 NGG 1.08738 | |
163 NGT 0.776699 | |
164 NGN 0.757282 | |
165 NTA 0.543689 | |
166 NTC 0.46602 | |
167 NTG 2.17476 | |
168 NTT 1.08738 | |
169 NTN 1.06796 | |
170 NNA 0.737864 | |
171 NNC 0.46602 | |
172 NNG 1.8835 | |
173 NNT 0.912621 | |
174 NNN 1 | |
175 end consensus | |
176 type 5SS_codon | |
177 phase 0 | |
178 begin consensus | |
179 AAA 0.512000 | |
180 AAC 0.512000 | |
181 AAG 6.144000 | |
182 AAT 1.536000 | |
183 AAN 2.176 | |
184 ACA 1.024000 | |
185 ACC 0.512000 | |
186 ACG 0.512000 | |
187 ACT 0.512000 | |
188 ACN 0.64 | |
189 AGA 0.512000 | |
190 AGC 0.512000 | |
191 AGG 1.536000 | |
192 AGT 1.024000 | |
193 AGN 0.896 | |
194 ATA 0.512000 | |
195 ATC 0.512000 | |
196 ATG 2.048000 | |
197 ATT 1.536000 | |
198 ATN 1.152 | |
199 ANA 0.64 | |
200 ANC 0.512 | |
201 ANG 2.56 | |
202 ANT 1.152 | |
203 ANN 1.216 | |
204 CAA 1.024000 | |
205 CAC 0.512000 | |
206 CAG 4.608000 | |
207 CAT 1.024000 | |
208 CAN 1.792 | |
209 CCA 0.512000 | |
210 CCC 0.512000 | |
211 CCG 1.024000 | |
212 CCT 0.512000 | |
213 CCN 0.64 | |
214 CGA 0.512000 | |
215 CGC 0.512000 | |
216 CGG 1.024000 | |
217 CGT 0.512000 | |
218 CGN 0.64 | |
219 CTA 0.512000 | |
220 CTC 0.512000 | |
221 CTG 1.536000 | |
222 CTT 1.024000 | |
223 CTN 0.896 | |
224 CNA 0.64 | |
225 CNC 0.512 | |
226 CNG 2.048 | |
227 CNT 0.768 | |
228 CNN 0.992 | |
229 GAA 0.512000 | |
230 GAC 0.512000 | |
231 GAG 4.096000 | |
232 GAT 1.536000 | |
233 GAN 1.664 | |
234 GCA 1.024000 | |
235 GCC 1.024000 | |
236 GCG 0.512000 | |
237 GCT 1.024000 | |
238 GCN 0.896 | |
239 GGA 0.512000 | |
240 GGC 0.512000 | |
241 GGG 0.512000 | |
242 GGT 0.512000 | |
243 GGN 0.512 | |
244 GTA 0.512000 | |
245 GTC 0.512000 | |
246 GTG 1.536000 | |
247 GTT 0.512000 | |
248 GTN 0.768 | |
249 GNA 0.64 | |
250 GNC 0.64 | |
251 GNG 1.664 | |
252 GNT 0.896 | |
253 GNN 0.96 | |
254 TAA 0.512000 | |
255 TAC 1.536000 | |
256 TAG 0.512000 | |
257 TAT 0.512000 | |
258 TAN 0.768 | |
259 TCA 0.512000 | |
260 TCC 0.512000 | |
261 TCG 0.512000 | |
262 TCT 1.536000 | |
263 TCN 0.768 | |
264 TGA 0.512000 | |
265 TGC 0.512000 | |
266 TGG 0.512000 | |
267 TGT 0.512000 | |
268 TGN 0.512 | |
269 TTA 1.024000 | |
270 TTC 0.512000 | |
271 TTG 2.048000 | |
272 TTT 1.536000 | |
273 TTN 1.28 | |
274 TNA 0.64 | |
275 TNC 0.768 | |
276 TNG 0.896 | |
277 TNT 1.024 | |
278 TNN 0.832 | |
279 NAA 0.64 | |
280 NAC 0.768 | |
281 NAG 3.84 | |
282 NAT 1.152 | |
283 NAN 1.6 | |
284 NCA 0.768 | |
285 NCC 0.64 | |
286 NCG 0.64 | |
287 NCT 0.896 | |
288 NCN 0.736 | |
289 NGA 0.512 | |
290 NGC 0.512 | |
291 NGG 0.896 | |
292 NGT 0.64 | |
293 NGN 0.64 | |
294 NTA 0.64 | |
295 NTC 0.512 | |
296 NTG 1.792 | |
297 NTT 1.152 | |
298 NTN 1.024 | |
299 NNA 0.64 | |
300 NNC 0.608 | |
301 NNG 1.792 | |
302 NNT 0.96 | |
303 NNN 1 | |
304 end consensus | |
305 type 5SS_codon | |
306 phase 1 | |
307 begin consensus | |
308 AAA 1.699115 | |
309 AAC 0.566372 | |
310 AAG 3.964602 | |
311 AAT 1.132743 | |
312 AAN 1.84071 | |
313 ACA 1.132743 | |
314 ACC 0.566372 | |
315 ACG 2.265487 | |
316 ACT 1.699115 | |
317 ACN 1.41593 | |
318 AGA 1.132743 | |
319 AGC 0.566372 | |
320 AGG 1.699115 | |
321 AGT 1.132743 | |
322 AGN 1.13274 | |
323 ATA 1.699115 | |
324 ATC 1.132743 | |
325 ATG 2.831858 | |
326 ATT 1.699115 | |
327 ATN 1.84071 | |
328 ANA 1.41593 | |
329 ANC 0.707965 | |
330 ANG 2.69027 | |
331 ANT 1.41593 | |
332 ANN 1.55752 | |
333 CAA 1.132743 | |
334 CAC 0.566372 | |
335 CAG 1.132743 | |
336 CAT 0.566372 | |
337 CAN 0.849557 | |
338 CCA 0.566372 | |
339 CCC 0.566372 | |
340 CCG 0.566372 | |
341 CCT 0.566372 | |
342 CCN 0.566372 | |
343 CGA 0.566372 | |
344 CGC 0.566372 | |
345 CGG 1.699115 | |
346 CGT 0.566372 | |
347 CGN 0.849558 | |
348 CTA 0.566372 | |
349 CTC 0.566372 | |
350 CTG 2.265487 | |
351 CTT 0.566372 | |
352 CTN 0.991151 | |
353 CNA 0.707965 | |
354 CNC 0.566372 | |
355 CNG 1.41593 | |
356 CNT 0.566372 | |
357 CNN 0.814159 | |
358 GAA 0.566372 | |
359 GAC 1.132743 | |
360 GAG 1.699115 | |
361 GAT 0.566372 | |
362 GAN 0.99115 | |
363 GCA 0.566372 | |
364 GCC 0.566372 | |
365 GCG 0.566372 | |
366 GCT 0.566372 | |
367 GCN 0.566372 | |
368 GGA 0.566372 | |
369 GGC 0.566372 | |
370 GGG 0.566372 | |
371 GGT 0.566372 | |
372 GGN 0.566372 | |
373 GTA 0.566372 | |
374 GTC 0.566372 | |
375 GTG 0.566372 | |
376 GTT 0.566372 | |
377 GTN 0.566372 | |
378 GNA 0.566372 | |
379 GNC 0.707965 | |
380 GNG 0.849558 | |
381 GNT 0.566372 | |
382 GNN 0.672567 | |
383 TAA 0.566372 | |
384 TAC 0.566372 | |
385 TAG 0.566372 | |
386 TAT 1.132743 | |
387 TAN 0.707965 | |
388 TCA 0.566372 | |
389 TCC 0.566372 | |
390 TCG 0.566372 | |
391 TCT 0.566372 | |
392 TCN 0.566372 | |
393 TGA 0.566372 | |
394 TGC 0.566372 | |
395 TGG 1.699115 | |
396 TGT 0.566372 | |
397 TGN 0.849558 | |
398 TTA 0.566372 | |
399 TTC 0.566372 | |
400 TTG 3.964602 | |
401 TTT 1.699115 | |
402 TTN 1.69912 | |
403 TNA 0.566372 | |
404 TNC 0.566372 | |
405 TNG 1.69912 | |
406 TNT 0.99115 | |
407 TNN 0.955752 | |
408 NAA 0.99115 | |
409 NAC 0.707965 | |
410 NAG 1.84071 | |
411 NAT 0.849557 | |
412 NAN 1.09735 | |
413 NCA 0.707965 | |
414 NCC 0.566372 | |
415 NCG 0.991151 | |
416 NCT 0.849558 | |
417 NCN 0.778761 | |
418 NGA 0.707965 | |
419 NGC 0.566372 | |
420 NGG 1.41593 | |
421 NGT 0.707965 | |
422 NGN 0.849558 | |
423 NTA 0.849558 | |
424 NTC 0.707965 | |
425 NTG 2.40708 | |
426 NTT 1.13274 | |
427 NTN 1.27434 | |
428 NNA 0.814159 | |
429 NNC 0.637168 | |
430 NNG 1.66372 | |
431 NNT 0.884956 | |
432 NNN 1 | |
433 end consensus | |
434 type 5SS_codon | |
435 phase 2 | |
436 begin consensus | |
437 AAA 2.666667 | |
438 AAC 1.333333 | |
439 AAG 2.666667 | |
440 AAT 2.000000 | |
441 AAN 2.16667 | |
442 ACA 0.666667 | |
443 ACC 0.666667 | |
444 ACG 1.333333 | |
445 ACT 0.666667 | |
446 ACN 0.833334 | |
447 AGA 2.666667 | |
448 AGC 0.666667 | |
449 AGG 0.666667 | |
450 AGT 2.666667 | |
451 AGN 1.66667 | |
452 ATA 0.666667 | |
453 ATC 0.666667 | |
454 ATG 1.333333 | |
455 ATT 0.666667 | |
456 ATN 0.833334 | |
457 ANA 1.66667 | |
458 ANC 0.833333 | |
459 ANG 1.5 | |
460 ANT 1.5 | |
461 ANN 1.375 | |
462 CAA 1.333333 | |
463 CAC 0.666667 | |
464 CAG 1.333333 | |
465 CAT 0.666667 | |
466 CAN 1 | |
467 CCA 0.666667 | |
468 CCC 0.666667 | |
469 CCG 0.666667 | |
470 CCT 0.666667 | |
471 CCN 0.666667 | |
472 CGA 1.333333 | |
473 CGC 0.666667 | |
474 CGG 0.666667 | |
475 CGT 0.666667 | |
476 CGN 0.833333 | |
477 CTA 0.666667 | |
478 CTC 0.666667 | |
479 CTG 0.666667 | |
480 CTT 0.666667 | |
481 CTN 0.666667 | |
482 CNA 1 | |
483 CNC 0.666667 | |
484 CNG 0.833333 | |
485 CNT 0.666667 | |
486 CNN 0.791667 | |
487 GAA 0.666667 | |
488 GAC 0.666667 | |
489 GAG 0.666667 | |
490 GAT 1.333333 | |
491 GAN 0.833334 | |
492 GCA 0.666667 | |
493 GCC 0.666667 | |
494 GCG 0.666667 | |
495 GCT 0.666667 | |
496 GCN 0.666667 | |
497 GGA 0.666667 | |
498 GGC 0.666667 | |
499 GGG 0.666667 | |
500 GGT 0.666667 | |
501 GGN 0.666667 | |
502 GTA 0.666667 | |
503 GTC 0.666667 | |
504 GTG 0.666667 | |
505 GTT 0.666667 | |
506 GTN 0.666667 | |
507 GNA 0.666667 | |
508 GNC 0.666667 | |
509 GNG 0.666667 | |
510 GNT 0.833333 | |
511 GNN 0.708334 | |
512 TAA 1.333333 | |
513 TAC 0.666667 | |
514 TAG 2.000000 | |
515 TAT 0.666667 | |
516 TAN 1.16667 | |
517 TCA 1.333333 | |
518 TCC 0.666667 | |
519 TCG 1.333333 | |
520 TCT 0.666667 | |
521 TCN 1 | |
522 TGA 1.333333 | |
523 TGC 1.333333 | |
524 TGG 1.333333 | |
525 TGT 1.333333 | |
526 TGN 1.33333 | |
527 TTA 0.666667 | |
528 TTC 1.333333 | |
529 TTG 0.666667 | |
530 TTT 1.333333 | |
531 TTN 1 | |
532 TNA 1.16667 | |
533 TNC 1 | |
534 TNG 1.33333 | |
535 TNT 1 | |
536 TNN 1.125 | |
537 NAA 1.5 | |
538 NAC 0.833333 | |
539 NAG 1.66667 | |
540 NAT 1.16667 | |
541 NAN 1.29167 | |
542 NCA 0.833334 | |
543 NCC 0.666667 | |
544 NCG 1 | |
545 NCT 0.666667 | |
546 NCN 0.791667 | |
547 NGA 1.5 | |
548 NGC 0.833334 | |
549 NGG 0.833334 | |
550 NGT 1.33333 | |
551 NGN 1.125 | |
552 NTA 0.666667 | |
553 NTC 0.833334 | |
554 NTG 0.833333 | |
555 NTT 0.833334 | |
556 NTN 0.791667 | |
557 NNA 1.125 | |
558 NNC 0.791667 | |
559 NNG 1.08333 | |
560 NNT 1 | |
561 NNN 1 | |
562 end consensus | |
563 type 3SS | |
564 center 3 | |
565 phase all | |
566 begin consensus | |
567 TAG--- 1.64062 | |
568 -AG--- 0.229167 | |
569 end consensus | |
570 type 3SS | |
571 center 3 | |
572 phase 0 | |
573 begin consensus | |
574 TAG--- 0.765625 | |
575 -AG--- 0.09375 | |
576 end consensus | |
577 type 3SS | |
578 center 3 | |
579 phase 1 | |
580 begin consensus | |
581 TAG--- 0.515625 | |
582 -AG--- 0.0885417 | |
583 end consensus | |
584 type 3SS | |
585 center 3 | |
586 phase 2 | |
587 begin consensus | |
588 -AG--- 0.125 | |
589 end consensus | |
590 type 3SS_codon | |
591 phase all | |
592 begin consensus | |
593 AAA 1.802817 | |
594 AAC 1.502347 | |
595 AAG 0.300469 | |
596 AAT 1.802817 | |
597 AAN 1.35211 | |
598 ACA 0.300469 | |
599 ACC 1.802817 | |
600 ACG 0.300469 | |
601 ACT 0.901408 | |
602 ACN 0.826291 | |
603 AGA 0.600939 | |
604 AGC 0.300469 | |
605 AGG 0.600939 | |
606 AGT 1.502347 | |
607 AGN 0.751173 | |
608 ATA 1.502347 | |
609 ATC 2.103286 | |
610 ATG 1.502347 | |
611 ATT 2.103286 | |
612 ATN 1.80282 | |
613 ANA 1.05164 | |
614 ANC 1.42723 | |
615 ANG 0.676056 | |
616 ANT 1.57746 | |
617 ANN 1.1831 | |
618 CAA 2.103286 | |
619 CAC 0.300469 | |
620 CAG 0.300469 | |
621 CAT 1.201878 | |
622 CAN 0.976526 | |
623 CCA 0.600939 | |
624 CCC 0.600939 | |
625 CCG 0.901408 | |
626 CCT 0.600939 | |
627 CCN 0.676056 | |
628 CGA 0.300469 | |
629 CGC 0.300469 | |
630 CGG 0.300469 | |
631 CGT 0.901408 | |
632 CGN 0.450704 | |
633 CTA 0.901408 | |
634 CTC 0.600939 | |
635 CTG 1.201878 | |
636 CTT 1.201878 | |
637 CTN 0.976526 | |
638 CNA 0.976526 | |
639 CNC 0.450704 | |
640 CNG 0.676056 | |
641 CNT 0.976526 | |
642 CNN 0.769953 | |
643 GAA 1.802817 | |
644 GAC 0.300469 | |
645 GAG 1.201878 | |
646 GAT 2.403756 | |
647 GAN 1.42723 | |
648 GCA 0.901408 | |
649 GCC 0.300469 | |
650 GCG 1.201878 | |
651 GCT 1.502347 | |
652 GCN 0.976526 | |
653 GGA 0.901408 | |
654 GGC 0.600939 | |
655 GGG 0.600939 | |
656 GGT 1.201878 | |
657 GGN 0.826291 | |
658 GTA 1.201878 | |
659 GTC 1.502347 | |
660 GTG 0.600939 | |
661 GTT 1.502347 | |
662 GTN 1.20188 | |
663 GNA 1.20188 | |
664 GNC 0.676056 | |
665 GNG 0.901408 | |
666 GNT 1.65258 | |
667 GNN 1.10798 | |
668 TAA 0.600939 | |
669 TAC 0.300469 | |
670 TAG 0.300469 | |
671 TAT 1.502347 | |
672 TAN 0.676056 | |
673 TCA 1.201878 | |
674 TCC 0.901408 | |
675 TCG 0.901408 | |
676 TCT 1.201878 | |
677 TCN 1.05164 | |
678 TGA 0.300469 | |
679 TGC 0.300469 | |
680 TGG 0.901408 | |
681 TGT 1.502347 | |
682 TGN 0.751173 | |
683 TTA 0.600939 | |
684 TTC 0.600939 | |
685 TTG 1.201878 | |
686 TTT 2.704225 | |
687 TTN 1.277 | |
688 TNA 0.676056 | |
689 TNC 0.525821 | |
690 TNG 0.826291 | |
691 TNT 1.7277 | |
692 TNN 0.938967 | |
693 NAA 1.57746 | |
694 NAC 0.600939 | |
695 NAG 0.525821 | |
696 NAT 1.7277 | |
697 NAN 1.10798 | |
698 NCA 0.751173 | |
699 NCC 0.901408 | |
700 NCG 0.826291 | |
701 NCT 1.05164 | |
702 NCN 0.882629 | |
703 NGA 0.525821 | |
704 NGC 0.375587 | |
705 NGG 0.600939 | |
706 NGT 1.277 | |
707 NGN 0.694835 | |
708 NTA 1.05164 | |
709 NTC 1.20188 | |
710 NTG 1.12676 | |
711 NTT 1.87793 | |
712 NTN 1.31455 | |
713 NNA 0.976526 | |
714 NNC 0.769953 | |
715 NNG 0.769953 | |
716 NNT 1.48357 | |
717 NNN 1 | |
718 end consensus | |
719 type 3SS_codon | |
720 phase 0 | |
721 begin consensus | |
722 AAA 1.465649 | |
723 AAC 1.465649 | |
724 AAG 0.488550 | |
725 AAT 1.954198 | |
726 AAN 1.34351 | |
727 ACA 0.488550 | |
728 ACC 1.954198 | |
729 ACG 0.488550 | |
730 ACT 0.977099 | |
731 ACN 0.977099 | |
732 AGA 0.488550 | |
733 AGC 0.488550 | |
734 AGG 0.488550 | |
735 AGT 1.954198 | |
736 AGN 0.854962 | |
737 ATA 1.465649 | |
738 ATC 0.488550 | |
739 ATG 0.977099 | |
740 ATT 1.465649 | |
741 ATN 1.09924 | |
742 ANA 0.9771 | |
743 ANC 1.09924 | |
744 ANG 0.610687 | |
745 ANT 1.58779 | |
746 ANN 1.0687 | |
747 CAA 2.931298 | |
748 CAC 0.488550 | |
749 CAG 0.488550 | |
750 CAT 0.977099 | |
751 CAN 1.22137 | |
752 CCA 0.977099 | |
753 CCC 0.488550 | |
754 CCG 0.488550 | |
755 CCT 0.977099 | |
756 CCN 0.732824 | |
757 CGA 0.488550 | |
758 CGC 0.488550 | |
759 CGG 0.488550 | |
760 CGT 0.488550 | |
761 CGN 0.48855 | |
762 CTA 1.465649 | |
763 CTC 0.977099 | |
764 CTG 0.488550 | |
765 CTT 0.977099 | |
766 CTN 0.977099 | |
767 CNA 1.46565 | |
768 CNC 0.610687 | |
769 CNG 0.48855 | |
770 CNT 0.854962 | |
771 CNN 0.854962 | |
772 GAA 1.954198 | |
773 GAC 0.488550 | |
774 GAG 0.977099 | |
775 GAT 2.931298 | |
776 GAN 1.58779 | |
777 GCA 0.977099 | |
778 GCC 0.488550 | |
779 GCG 0.977099 | |
780 GCT 0.488550 | |
781 GCN 0.732824 | |
782 GGA 0.488550 | |
783 GGC 0.977099 | |
784 GGG 0.977099 | |
785 GGT 1.465649 | |
786 GGN 0.977099 | |
787 GTA 1.465649 | |
788 GTC 0.977099 | |
789 GTG 0.488550 | |
790 GTT 1.465649 | |
791 GTN 1.09924 | |
792 GNA 1.22137 | |
793 GNC 0.732824 | |
794 GNG 0.854962 | |
795 GNT 1.58779 | |
796 GNN 1.09924 | |
797 TAA 0.488550 | |
798 TAC 0.488550 | |
799 TAG 0.488550 | |
800 TAT 0.977099 | |
801 TAN 0.610687 | |
802 TCA 1.465649 | |
803 TCC 1.465649 | |
804 TCG 0.977099 | |
805 TCT 1.954198 | |
806 TCN 1.46565 | |
807 TGA 0.488550 | |
808 TGC 0.488550 | |
809 TGG 0.977099 | |
810 TGT 0.488550 | |
811 TGN 0.610687 | |
812 TTA 0.977099 | |
813 TTC 0.488550 | |
814 TTG 0.488550 | |
815 TTT 2.931298 | |
816 TTN 1.22137 | |
817 TNA 0.854962 | |
818 TNC 0.732825 | |
819 TNG 0.732824 | |
820 TNT 1.58779 | |
821 TNN 0.977099 | |
822 NAA 1.70992 | |
823 NAC 0.732825 | |
824 NAG 0.610687 | |
825 NAT 1.70992 | |
826 NAN 1.19084 | |
827 NCA 0.977099 | |
828 NCC 1.09924 | |
829 NCG 0.732824 | |
830 NCT 1.09924 | |
831 NCN 0.977099 | |
832 NGA 0.48855 | |
833 NGC 0.610687 | |
834 NGG 0.732824 | |
835 NGT 1.09924 | |
836 NGN 0.732825 | |
837 NTA 1.34351 | |
838 NTC 0.732824 | |
839 NTG 0.610687 | |
840 NTT 1.70992 | |
841 NTN 1.09924 | |
842 NNA 1.12977 | |
843 NNC 0.793893 | |
844 NNG 0.671756 | |
845 NNT 1.40458 | |
846 NNN 1 | |
847 end consensus | |
848 type 3SS_codon | |
849 phase 1 | |
850 begin consensus | |
851 AAA 1.684211 | |
852 AAC 1.122807 | |
853 AAG 0.561404 | |
854 AAT 1.684211 | |
855 AAN 1.26316 | |
856 ACA 0.561404 | |
857 ACC 1.684211 | |
858 ACG 0.561404 | |
859 ACT 0.561404 | |
860 ACN 0.842106 | |
861 AGA 1.122807 | |
862 AGC 0.561404 | |
863 AGG 1.122807 | |
864 AGT 0.561404 | |
865 AGN 0.842106 | |
866 ATA 1.122807 | |
867 ATC 2.245614 | |
868 ATG 2.245614 | |
869 ATT 1.684211 | |
870 ATN 1.82456 | |
871 ANA 1.12281 | |
872 ANC 1.40351 | |
873 ANG 1.12281 | |
874 ANT 1.12281 | |
875 ANN 1.19298 | |
876 CAA 0.561404 | |
877 CAC 0.561404 | |
878 CAG 0.561404 | |
879 CAT 1.122807 | |
880 CAN 0.701755 | |
881 CCA 0.561404 | |
882 CCC 0.561404 | |
883 CCG 1.122807 | |
884 CCT 0.561404 | |
885 CCN 0.701755 | |
886 CGA 0.561404 | |
887 CGC 0.561404 | |
888 CGG 0.561404 | |
889 CGT 1.684211 | |
890 CGN 0.842106 | |
891 CTA 0.561404 | |
892 CTC 0.561404 | |
893 CTG 2.245614 | |
894 CTT 1.684211 | |
895 CTN 1.26316 | |
896 CNA 0.561404 | |
897 CNC 0.561404 | |
898 CNG 1.12281 | |
899 CNT 1.26316 | |
900 CNN 0.877193 | |
901 GAA 1.684211 | |
902 GAC 0.561404 | |
903 GAG 1.684211 | |
904 GAT 1.122807 | |
905 GAN 1.26316 | |
906 GCA 1.122807 | |
907 GCC 0.561404 | |
908 GCG 0.561404 | |
909 GCT 1.122807 | |
910 GCN 0.842105 | |
911 GGA 1.122807 | |
912 GGC 0.561404 | |
913 GGG 0.561404 | |
914 GGT 1.122807 | |
915 GGN 0.842105 | |
916 GTA 1.122807 | |
917 GTC 1.684211 | |
918 GTG 1.122807 | |
919 GTT 1.122807 | |
920 GTN 1.26316 | |
921 GNA 1.26316 | |
922 GNC 0.842106 | |
923 GNG 0.982457 | |
924 GNT 1.12281 | |
925 GNN 1.05263 | |
926 TAA 0.561404 | |
927 TAC 0.561404 | |
928 TAG 0.561404 | |
929 TAT 0.561404 | |
930 TAN 0.561404 | |
931 TCA 0.561404 | |
932 TCC 0.561404 | |
933 TCG 0.561404 | |
934 TCT 0.561404 | |
935 TCN 0.561404 | |
936 TGA 0.561404 | |
937 TGC 0.561404 | |
938 TGG 1.122807 | |
939 TGT 1.122807 | |
940 TGN 0.842105 | |
941 TTA 0.561404 | |
942 TTC 1.122807 | |
943 TTG 2.245614 | |
944 TTT 2.245614 | |
945 TTN 1.54386 | |
946 TNA 0.561404 | |
947 TNC 0.701755 | |
948 TNG 1.12281 | |
949 TNT 1.12281 | |
950 TNN 0.877193 | |
951 NAA 1.12281 | |
952 NAC 0.701755 | |
953 NAG 0.842106 | |
954 NAT 1.12281 | |
955 NAN 0.947369 | |
956 NCA 0.701755 | |
957 NCC 0.842106 | |
958 NCG 0.701755 | |
959 NCT 0.701755 | |
960 NCN 0.736842 | |
961 NGA 0.842106 | |
962 NGC 0.561404 | |
963 NGG 0.842105 | |
964 NGT 1.12281 | |
965 NGN 0.842106 | |
966 NTA 0.842106 | |
967 NTC 1.40351 | |
968 NTG 1.96491 | |
969 NTT 1.68421 | |
970 NTN 1.47368 | |
971 NNA 0.877193 | |
972 NNC 0.877193 | |
973 NNG 1.08772 | |
974 NNT 1.15789 | |
975 NNN 1 | |
976 end consensus | |
977 type 3SS_codon | |
978 phase 2 | |
979 begin consensus | |
980 AAA 1.333333 | |
981 AAC 1.333333 | |
982 AAG 0.666667 | |
983 AAT 0.666667 | |
984 AAN 1 | |
985 ACA 0.666667 | |
986 ACC 0.666667 | |
987 ACG 0.666667 | |
988 ACT 1.333333 | |
989 ACN 0.833334 | |
990 AGA 0.666667 | |
991 AGC 0.666667 | |
992 AGG 0.666667 | |
993 AGT 1.333333 | |
994 AGN 0.833334 | |
995 ATA 1.333333 | |
996 ATC 2.666667 | |
997 ATG 0.666667 | |
998 ATT 2.000000 | |
999 ATN 1.66667 | |
1000 ANA 1 | |
1001 ANC 1.33333 | |
1002 ANG 0.666667 | |
1003 ANT 1.33333 | |
1004 ANN 1.08333 | |
1005 CAA 1.333333 | |
1006 CAC 0.666667 | |
1007 CAG 0.666667 | |
1008 CAT 1.333333 | |
1009 CAN 1 | |
1010 CCA 0.666667 | |
1011 CCC 1.333333 | |
1012 CCG 1.333333 | |
1013 CCT 0.666667 | |
1014 CCN 1 | |
1015 CGA 0.666667 | |
1016 CGC 0.666667 | |
1017 CGG 0.666667 | |
1018 CGT 0.666667 | |
1019 CGN 0.666667 | |
1020 CTA 0.666667 | |
1021 CTC 0.666667 | |
1022 CTG 0.666667 | |
1023 CTT 0.666667 | |
1024 CTN 0.666667 | |
1025 CNA 0.833333 | |
1026 CNC 0.833333 | |
1027 CNG 0.833333 | |
1028 CNT 0.833333 | |
1029 CNN 0.833334 | |
1030 GAA 0.666667 | |
1031 GAC 0.666667 | |
1032 GAG 0.666667 | |
1033 GAT 1.333333 | |
1034 GAN 0.833334 | |
1035 GCA 0.666667 | |
1036 GCC 0.666667 | |
1037 GCG 2.000000 | |
1038 GCT 2.666667 | |
1039 GCN 1.5 | |
1040 GGA 1.333333 | |
1041 GGC 0.666667 | |
1042 GGG 0.666667 | |
1043 GGT 0.666667 | |
1044 GGN 0.833333 | |
1045 GTA 0.666667 | |
1046 GTC 1.333333 | |
1047 GTG 0.666667 | |
1048 GTT 1.333333 | |
1049 GTN 1 | |
1050 GNA 0.833334 | |
1051 GNC 0.833334 | |
1052 GNG 1 | |
1053 GNT 1.5 | |
1054 GNN 1.04167 | |
1055 TAA 1.333333 | |
1056 TAC 0.666667 | |
1057 TAG 0.666667 | |
1058 TAT 2.666667 | |
1059 TAN 1.33333 | |
1060 TCA 1.333333 | |
1061 TCC 0.666667 | |
1062 TCG 1.333333 | |
1063 TCT 0.666667 | |
1064 TCN 1 | |
1065 TGA 0.666667 | |
1066 TGC 0.666667 | |
1067 TGG 0.666667 | |
1068 TGT 2.666667 | |
1069 TGN 1.16667 | |
1070 TTA 0.666667 | |
1071 TTC 0.666667 | |
1072 TTG 0.666667 | |
1073 TTT 0.666667 | |
1074 TTN 0.666667 | |
1075 TNA 1 | |
1076 TNC 0.666667 | |
1077 TNG 0.833333 | |
1078 TNT 1.66667 | |
1079 TNN 1.04167 | |
1080 NAA 1.16667 | |
1081 NAC 0.833333 | |
1082 NAG 0.666667 | |
1083 NAT 1.5 | |
1084 NAN 1.04167 | |
1085 NCA 0.833334 | |
1086 NCC 0.833333 | |
1087 NCG 1.33333 | |
1088 NCT 1.33333 | |
1089 NCN 1.08333 | |
1090 NGA 0.833334 | |
1091 NGC 0.666667 | |
1092 NGG 0.666667 | |
1093 NGT 1.33333 | |
1094 NGN 0.875 | |
1095 NTA 0.833333 | |
1096 NTC 1.33333 | |
1097 NTG 0.666667 | |
1098 NTT 1.16667 | |
1099 NTN 1 | |
1100 NNA 0.916667 | |
1101 NNC 0.916667 | |
1102 NNG 0.833334 | |
1103 NNT 1.33333 | |
1104 NNN 1 | |
1105 end consensus | |
1106 type CDS | |
1107 phase all | |
1108 begin consensus | |
1109 AAA 2.386335 | |
1110 AAC 1.053160 | |
1111 AAG 1.564912 | |
1112 AAT 1.686987 | |
1113 AAN 1.67285 | |
1114 ACA 0.987639 | |
1115 ACC 0.645552 | |
1116 ACG 0.588997 | |
1117 ACT 1.051091 | |
1118 ACN 0.81832 | |
1119 AGA 1.264206 | |
1120 AGC 0.831769 | |
1121 AGG 0.727625 | |
1122 AGT 0.865564 | |
1123 AGN 0.922291 | |
1124 ATA 0.993847 | |
1125 ATC 1.040746 | |
1126 ATG 1.394558 | |
1127 ATT 1.851134 | |
1128 ATN 1.32007 | |
1129 ANA 1.40801 | |
1130 ANC 0.892807 | |
1131 ANG 1.06902 | |
1132 ANT 1.36369 | |
1133 ANN 1.18338 | |
1134 CAA 1.498701 | |
1135 CAC 0.575203 | |
1136 CAG 0.708314 | |
1137 CAT 0.951086 | |
1138 CAN 0.933326 | |
1139 CCA 0.795215 | |
1140 CCC 0.491751 | |
1141 CCG 0.455887 | |
1142 CCT 0.832459 | |
1143 CCN 0.643828 | |
1144 CGA 0.706935 | |
1145 CGC 0.368985 | |
1146 CGG 0.354502 | |
1147 CGT 0.741419 | |
1148 CGN 0.54296 | |
1149 CTA 0.836597 | |
1150 CTC 0.861426 | |
1151 CTG 0.917980 | |
1152 CTT 1.436629 | |
1153 CTN 1.01316 | |
1154 CNA 0.959362 | |
1155 CNC 0.574341 | |
1156 CNG 0.609171 | |
1157 CNT 0.990398 | |
1158 CNN 0.783318 | |
1159 GAA 1.682160 | |
1160 GAC 0.641414 | |
1161 GAG 0.823493 | |
1162 GAT 1.255930 | |
1163 GAN 1.10075 | |
1164 GCA 0.793146 | |
1165 GCC 0.515890 | |
1166 GCG 0.364847 | |
1167 GCT 0.964880 | |
1168 GCN 0.659691 | |
1169 GGA 0.946258 | |
1170 GGC 0.470370 | |
1171 GGG 0.352433 | |
1172 GGT 0.846942 | |
1173 GGN 0.654001 | |
1174 GTA 0.737281 | |
1175 GTC 0.688313 | |
1176 GTG 0.724867 | |
1177 GTT 1.275931 | |
1178 GTN 0.856598 | |
1179 GNA 1.03971 | |
1180 GNC 0.578997 | |
1181 GNG 0.56641 | |
1182 GNT 1.08592 | |
1183 GNN 0.81776 | |
1184 TAA 1.130406 | |
1185 TAC 0.999364 | |
1186 TAG 0.591066 | |
1187 TAT 1.385592 | |
1188 TAN 1.02661 | |
1189 TCA 1.159373 | |
1190 TCC 0.921429 | |
1191 TCG 0.764179 | |
1192 TCT 1.205582 | |
1193 TCN 1.01264 | |
1194 TGA 1.487666 | |
1195 TGC 0.967638 | |
1196 TGG 1.180064 | |
1197 TGT 0.966949 | |
1198 TGN 1.15058 | |
1199 TTA 1.538704 | |
1200 TTC 1.455251 | |
1201 TTG 1.566981 | |
1202 TTT 2.128391 | |
1203 TTN 1.67233 | |
1204 TNA 1.32904 | |
1205 TNC 1.08592 | |
1206 TNG 1.02557 | |
1207 TNT 1.42163 | |
1208 TNN 1.21554 | |
1209 NAA 1.6744 | |
1210 NAC 0.817285 | |
1211 NAG 0.921946 | |
1212 NAT 1.3199 | |
1213 NAN 1.18338 | |
1214 NCA 0.933843 | |
1215 NCC 0.643655 | |
1216 NCG 0.543477 | |
1217 NCT 1.0135 | |
1218 NCN 0.78362 | |
1219 NGA 1.10127 | |
1220 NGC 0.65969 | |
1221 NGG 0.653656 | |
1222 NGT 0.855218 | |
1223 NGN 0.817458 | |
1224 NTA 1.02661 | |
1225 NTC 1.01143 | |
1226 NTG 1.1511 | |
1227 NTT 1.67302 | |
1228 NTN 1.21554 | |
1229 NNA 1.18403 | |
1230 NNC 0.783016 | |
1231 NNG 0.817544 | |
1232 NNT 1.21541 | |
1233 NNN 1 | |
1234 end consensus | |
1235 type CDS | |
1236 phase 0 | |
1237 begin consensus | |
1238 AAA 2.488005 | |
1239 AAC 1.039424 | |
1240 AAG 1.727552 | |
1241 AAT 2.175971 | |
1242 AAN 1.85774 | |
1243 ACA 0.874108 | |
1244 ACC 0.690194 | |
1245 ACG 0.386426 | |
1246 ACT 1.630428 | |
1247 ACN 0.895289 | |
1248 AGA 0.702593 | |
1249 AGC 0.514546 | |
1250 AGG 0.276904 | |
1251 AGT 0.880307 | |
1252 AGN 0.593587 | |
1253 ATA 0.741855 | |
1254 ATC 0.721191 | |
1255 ATG 1.264667 | |
1256 ATT 2.516935 | |
1257 ATN 1.31116 | |
1258 ANA 1.20164 | |
1259 ANC 0.741339 | |
1260 ANG 0.913887 | |
1261 ANT 1.80091 | |
1262 ANN 1.16444 | |
1263 CAA 1.702754 | |
1264 CAC 0.394692 | |
1265 CAG 0.702593 | |
1266 CAT 1.045623 | |
1267 CAN 0.961415 | |
1268 CCA 0.774918 | |
1269 CCC 0.566207 | |
1270 CCG 0.258306 | |
1271 CCT 1.444448 | |
1272 CCN 0.76097 | |
1273 CGA 0.481483 | |
1274 CGC 0.421556 | |
1275 CGG 0.171515 | |
1276 CGT 1.318395 | |
1277 CGN 0.598237 | |
1278 CTA 0.506280 | |
1279 CTC 0.477350 | |
1280 CTG 0.343031 | |
1281 CTT 1.657292 | |
1282 CTN 0.745988 | |
1283 CNA 0.866359 | |
1284 CNC 0.464951 | |
1285 CNG 0.368861 | |
1286 CNT 1.36644 | |
1287 CNN 0.766653 | |
1288 GAA 2.884763 | |
1289 GAC 1.039424 | |
1290 GAG 1.504375 | |
1291 GAT 2.576862 | |
1292 GAN 2.00136 | |
1293 GCA 1.004294 | |
1294 GCC 0.745988 | |
1295 GCG 0.291369 | |
1296 GCT 1.905266 | |
1297 GCN 0.986729 | |
1298 GGA 1.049756 | |
1299 GGC 0.599270 | |
1300 GGG 0.264506 | |
1301 GGT 1.582900 | |
1302 GGN 0.874108 | |
1303 GTA 0.762520 | |
1304 GTC 0.750121 | |
1305 GTG 0.495948 | |
1306 GTT 2.006522 | |
1307 GTN 1.00378 | |
1308 GNA 1.42533 | |
1309 GNC 0.783701 | |
1310 GNG 0.639049 | |
1311 GNT 2.01789 | |
1312 GNN 1.21649 | |
1313 TAA 0.000000 | |
1314 TAC 0.770786 | |
1315 TAG 0.000000 | |
1316 TAT 1.477511 | |
1317 TAN 0.562074 | |
1318 TCA 1.024959 | |
1319 TCC 0.772852 | |
1320 TCG 0.415356 | |
1321 TCT 1.826741 | |
1322 TCN 1.00998 | |
1323 TGA 0.000000 | |
1324 TGC 0.322366 | |
1325 TGG 0.588938 | |
1326 TGT 0.485616 | |
1327 TGN 0.34923 | |
1328 TTA 1.630428 | |
1329 TTC 0.907171 | |
1330 TTG 1.450647 | |
1331 TTT 1.965193 | |
1332 TTN 1.48836 | |
1333 TNA 0.663847 | |
1334 TNC 0.693294 | |
1335 TNG 0.613735 | |
1336 TNT 1.43877 | |
1337 TNN 0.85241 | |
1338 NAA 1.76888 | |
1339 NAC 0.811082 | |
1340 NAG 0.98363 | |
1341 NAT 1.81899 | |
1342 NAN 1.34565 | |
1343 NCA 0.91957 | |
1344 NCC 0.69381 | |
1345 NCG 0.337864 | |
1346 NCT 1.70172 | |
1347 NCN 0.913241 | |
1348 NGA 0.558458 | |
1349 NGC 0.464434 | |
1350 NGG 0.325466 | |
1351 NGT 1.0668 | |
1352 NGN 0.603791 | |
1353 NTA 0.910271 | |
1354 NTC 0.713958 | |
1355 NTG 0.888573 | |
1356 NTT 2.03649 | |
1357 NTN 1.13732 | |
1358 NNA 1.03929 | |
1359 NNC 0.670821 | |
1360 NNG 0.633883 | |
1361 NNT 1.656 | |
1362 NNN 1 | |
1363 end consensus | |
1364 type CDS | |
1365 phase 1 | |
1366 begin consensus | |
1367 AAA 2.349249 | |
1368 AAC 1.177724 | |
1369 AAG 2.219080 | |
1370 AAT 1.330621 | |
1371 AAN 1.76917 | |
1372 ACA 1.167393 | |
1373 ACC 0.504148 | |
1374 ACG 0.816142 | |
1375 ACT 0.756223 | |
1376 ACN 0.810976 | |
1377 AGA 1.086812 | |
1378 AGC 0.979370 | |
1379 AGG 1.134334 | |
1380 AGT 0.735561 | |
1381 AGN 0.984019 | |
1382 ATA 1.694270 | |
1383 ATC 1.365747 | |
1384 ATG 2.539338 | |
1385 ATT 1.675674 | |
1386 ATN 1.81876 | |
1387 ANA 1.57443 | |
1388 ANC 1.00675 | |
1389 ANG 1.67722 | |
1390 ANT 1.12452 | |
1391 ANN 1.34573 | |
1392 CAA 1.200452 | |
1393 CAC 0.667377 | |
1394 CAG 1.028959 | |
1395 CAT 0.781017 | |
1396 CAN 0.919451 | |
1397 CCA 0.997966 | |
1398 CCC 0.456626 | |
1399 CCG 0.727296 | |
1400 CCT 0.595061 | |
1401 CCN 0.694237 | |
1402 CGA 0.435964 | |
1403 CGC 0.227280 | |
1404 CGG 0.378111 | |
1405 CGT 0.309927 | |
1406 CGN 0.337821 | |
1407 CTA 1.661211 | |
1408 CTC 1.413269 | |
1409 CTG 2.157094 | |
1410 CTT 1.576497 | |
1411 CTN 1.70202 | |
1412 CNA 1.0739 | |
1413 CNC 0.691138 | |
1414 CNG 1.07286 | |
1415 CNT 0.815626 | |
1416 CNN 0.913382 | |
1417 GAA 0.865730 | |
1418 GAC 0.384310 | |
1419 GAG 0.545472 | |
1420 GAT 0.440097 | |
1421 GAN 0.558902 | |
1422 GCA 0.615722 | |
1423 GCC 0.355383 | |
1424 GCG 0.475222 | |
1425 GCT 0.411170 | |
1426 GCN 0.464374 | |
1427 GGA 0.407038 | |
1428 GGC 0.245876 | |
1429 GGG 0.334722 | |
1430 GGT 0.314060 | |
1431 GGN 0.325424 | |
1432 GTA 1.076481 | |
1433 GTC 0.791348 | |
1434 GTG 1.504181 | |
1435 GTT 0.894657 | |
1436 GTN 1.06667 | |
1437 GNA 0.741243 | |
1438 GNC 0.444229 | |
1439 GNG 0.714899 | |
1440 GNT 0.514996 | |
1441 GNN 0.603842 | |
1442 TAA 1.140533 | |
1443 TAC 0.768620 | |
1444 TAG 0.964907 | |
1445 TAT 0.766554 | |
1446 TAN 0.910154 | |
1447 TCA 0.896723 | |
1448 TCC 0.595061 | |
1449 TCG 0.760355 | |
1450 TCT 0.603325 | |
1451 TCN 0.713866 | |
1452 TGA 1.037224 | |
1453 TGC 0.665311 | |
1454 TGG 1.208717 | |
1455 TGT 0.640517 | |
1456 TGN 0.887942 | |
1457 TTA 1.993866 | |
1458 TTC 1.686005 | |
1459 TTG 2.652978 | |
1460 TTT 1.812042 | |
1461 TTN 2.03622 | |
1462 TNA 1.26709 | |
1463 TNC 0.928749 | |
1464 TNG 1.39674 | |
1465 TNT 0.95561 | |
1466 TNN 1.13705 | |
1467 NAA 1.38899 | |
1468 NAC 0.749508 | |
1469 NAG 1.1896 | |
1470 NAT 0.829572 | |
1471 NAN 1.03942 | |
1472 NCA 0.919451 | |
1473 NCC 0.477804 | |
1474 NCG 0.694754 | |
1475 NCT 0.591445 | |
1476 NCN 0.670863 | |
1477 NGA 0.741759 | |
1478 NGC 0.529459 | |
1479 NGG 0.763971 | |
1480 NGT 0.500016 | |
1481 NGN 0.633801 | |
1482 NTA 1.60646 | |
1483 NTC 1.31409 | |
1484 NTG 2.2134 | |
1485 NTT 1.48972 | |
1486 NTN 1.65592 | |
1487 NNA 1.16416 | |
1488 NNC 0.767716 | |
1489 NNG 1.21543 | |
1490 NNT 0.852688 | |
1491 NNN 1 | |
1492 end consensus | |
1493 type CDS | |
1494 phase 2 | |
1495 begin consensus | |
1496 AAA 2.316265 | |
1497 AAC 0.942210 | |
1498 AAG 0.745916 | |
1499 AAT 1.551753 | |
1500 AAN 1.38904 | |
1501 ACA 0.921547 | |
1502 ACC 0.743850 | |
1503 ACG 0.566152 | |
1504 ACT 0.766578 | |
1505 ACN 0.749532 | |
1506 AGA 2.002195 | |
1507 AGC 1.002131 | |
1508 AGG 0.772777 | |
1509 AGT 0.981468 | |
1510 AGN 1.18964 | |
1511 ATA 0.545490 | |
1512 ATC 1.035191 | |
1513 ATG 0.378124 | |
1514 ATT 1.357526 | |
1515 ATN 0.829083 | |
1516 ANA 1.44637 | |
1517 ANC 0.930845 | |
1518 ANG 0.615742 | |
1519 ANT 1.16433 | |
1520 ANN 1.03932 | |
1521 CAA 1.591012 | |
1522 CAC 0.665332 | |
1523 CAG 0.394654 | |
1524 CAT 1.026926 | |
1525 CAN 0.919481 | |
1526 CCA 0.613676 | |
1527 CCC 0.454575 | |
1528 CCG 0.384322 | |
1529 CCT 0.458707 | |
1530 CCN 0.47782 | |
1531 CGA 1.204623 | |
1532 CGC 0.460774 | |
1533 CGG 0.516562 | |
1534 CGT 0.597146 | |
1535 CGN 0.694776 | |
1536 CTA 0.342997 | |
1537 CTC 0.694260 | |
1538 CTG 0.254149 | |
1539 CTT 1.074450 | |
1540 CTN 0.591464 | |
1541 CNA 0.938077 | |
1542 CNC 0.568735 | |
1543 CNG 0.387422 | |
1544 CNT 0.789307 | |
1545 CNN 0.670885 | |
1546 GAA 1.293472 | |
1547 GAC 0.502099 | |
1548 GAG 0.421515 | |
1549 GAT 0.750048 | |
1550 GAN 0.741783 | |
1551 GCA 0.760380 | |
1552 GCC 0.448376 | |
1553 GCG 0.330600 | |
1554 GCT 0.578550 | |
1555 GCN 0.529477 | |
1556 GGA 1.382321 | |
1557 GGC 0.568219 | |
1558 GGG 0.460774 | |
1559 GGT 0.644670 | |
1560 GGN 0.763996 | |
1561 GTA 0.373991 | |
1562 GTC 0.524827 | |
1563 GTG 0.175631 | |
1564 GTT 0.925680 | |
1565 GTN 0.500032 | |
1566 GNA 0.952541 | |
1567 GNC 0.51088 | |
1568 GNG 0.34713 | |
1569 GNT 0.724737 | |
1570 GNN 0.633822 | |
1571 TAA 2.248079 | |
1572 TAC 1.458772 | |
1573 TAG 0.807903 | |
1574 TAT 1.911280 | |
1575 TAN 1.60651 | |
1576 TCA 1.555886 | |
1577 TCC 1.396784 | |
1578 TCG 1.117841 | |
1579 TCT 1.186027 | |
1580 TCN 1.31413 | |
1581 TGA 3.421709 | |
1582 TGC 1.915413 | |
1583 TGG 1.741848 | |
1584 TGT 1.774908 | |
1585 TGN 2.21347 | |
1586 TTA 0.989733 | |
1587 TTC 1.770775 | |
1588 TTG 0.595080 | |
1589 TTT 2.603474 | |
1590 TTN 1.48977 | |
1591 TNA 2.05385 | |
1592 TNC 1.63544 | |
1593 TNG 1.06567 | |
1594 TNT 1.86892 | |
1595 TNN 1.65597 | |
1596 NAA 1.86221 | |
1597 NAC 0.892103 | |
1598 NAG 0.592497 | |
1599 NAT 1.31 | |
1600 NAN 1.1642 | |
1601 NCA 0.962872 | |
1602 NCC 0.760896 | |
1603 NCG 0.599729 | |
1604 NCT 0.747465 | |
1605 NCN 0.767741 | |
1606 NGA 2.00271 | |
1607 NGC 0.986634 | |
1608 NGG 0.87299 | |
1609 NGT 0.999548 | |
1610 NGN 1.21547 | |
1611 NTA 0.563053 | |
1612 NTC 1.00626 | |
1613 NTG 0.350746 | |
1614 NTT 1.49028 | |
1615 NTN 0.852586 | |
1616 NNA 1.34771 | |
1617 NNC 0.911474 | |
1618 NNG 0.603991 | |
1619 NNT 1.13682 | |
1620 NNN 1 | |
1621 end consensus | |
1622 type Intron_Corr_Term | |
1623 phase all | |
1624 225.12 | |
1625 type Intron_Corr_Term | |
1626 phase 0 | |
1627 524.049 | |
1628 type Intron_Corr_Term | |
1629 phase 1 | |
1630 652.388 | |
1631 type Intron_Corr_Term | |
1632 phase 2 | |
1633 998.969 | |
1634 type Intron_emission | |
1635 begin consensus | |
1636 A 1.233115 | |
1637 C 0.595593 | |
1638 G 0.670399 | |
1639 T 1.500893 | |
1640 end consensus | |
1641 type Pyrimidine_emission | |
1642 begin consensus | |
1643 A 0.261549 | |
1644 C 0.869936 | |
1645 G 0.127932 | |
1646 T 2.740583 | |
1647 end consensus | |
1648 type Spacer_emission | |
1649 begin consensus | |
1650 A 1.495231 | |
1651 C 0.607484 | |
1652 G 0.513573 | |
1653 T 1.383712 | |
1654 end consensus | |
1655 type Intron_Stay_Prob | |
1656 0.988929 | |
1657 type Central_Intron_Stay_Prob | |
1658 0.983466 | |
1659 type Pyrimidine_Stay_Prob | |
1660 0.904578 | |
1661 type No_Spacer_Prob | |
1662 0.0743243 | |
1663 type Spacer_Stay_Prob | |
1664 0.952081 |