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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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1 <tool id="addstring2fashead" name="AddString2FAShead" version="1.0">
2 <description>Converts FASTA file with sequences from same species and gene family to PHYTAB format</description>
3 <command interpreter="perl">
4 addstring2fashead.pl $infile $species > $outfile
5 2>&amp;1
6 </command>
7 <inputs>
8 <param name="infile" type="data" format="fasta" label="Input File" help="fasta file to convert" />
9 <param name="species" type="text" format="tabular" label="Text string" help="" />
10 </inputs>
11 <outputs>
12 <data format="tabular" name="outfile" label="${tool.name} on ${on_string}: Out file" />
13 </outputs>
14 <help>
15 **What it does**
16
17 This tool adds a text string to the beginning of all headers of an input file in FASTA format. The FASTA
18 input file should have sequences from the same species and gene family. The output is a PHYTAB format file.
19
20 ------
21
22 **Inputs**
23
24 FASTA file of sequences from same species and gene family. FASTA format:
25 http://www.ncbi.nlm.nih.gov/blast/blastcgihelp.shtml
26
27 ------
28
29 **Outputs**
30
31 PHYTAB file format. Description:
32 http://osiris-phylogenetics.blogspot.com/2012/09/introduction-to-phytab-format.html
33
34 -------
35
36 **Additional Information**
37
38 Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the osiris_phylogenetics site at bitbucket.org
39
40 ------
41
42 **Citations**
43
44 This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a
45 publication, please consider citing the following.
46
47 Current Osiris Citation is here
48
49 http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
50 </help>
51 </tool>