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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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1 <tool id="fasconcat" name="FASConcat" version="1.0">
2 <description>Appends all input sequence files into one file</description>
3 <command interpreter="perl">fasconcat.pl $outputFormat $totalNum
4 #for $file in $sourceFiles
5 ${file.input}
6 #end for
7 </command>
8 <inputs>
9 <param name="totalNum" type="integer" value="1" label="Total number of input files" />
10 <repeat name="sourceFiles" title="Input files (FASTA, Phylip or NEXUS)" >
11 <param name="input" type="data" label="input files" />
12 </repeat>
13 <param name="outputFormat" type="select" label="Choose the output file format">
14 <option value="0" selected="true">FASTA Only</option>
15 <option value="1">Phylip Only</option>
16 <option value="2">NEXUS Only</option>
17 </param>
18 </inputs>
19
20 <outputs>
21 <data from_work_dir="FcC_info.xls" />
22 <data from_work_dir="output" />
23 </outputs>
24 <help>
25 **What it does**
26
27 FASConcat appends all input sequences into one file.
28
29 ------
30
31 **Inputs**
32
33 FASTA, Phylip, NEXUS
34
35 ------
36
37 **Outputs**
38
39 FASTA, Phylip, NEXUS
40
41 -------
42
43 **Additional Information**
44
45 Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the
46 osiris_phylogenetics site at bitbucket.org
47
48 -------
49
50 **Citations**
51
52 This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this
53 tool in a publication, please consider citing the following.
54
55 Current Osiris Citation is here
56
57 http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
58 </help>
59 </tool>