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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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1 <tool id="mview" name="MView" version="1.0">
2 <description>View multiple sequence alignment in HTML</description>
3 <requirements><requirement type="package">mview</requirement></requirements>
4 <command interpreter="perl">mview.pl $input $dna > $output </command>
5 <inputs>
6 <param format="fasta" name="input" type="data" label="Aligned fasta file to visualize" />
7 <param name="dna" type="select" label="Data type">
8 <option value="DNA">DNA</option>
9 <option value="Protein">Protein</option>
10 </param>
11
12 </inputs>
13 <outputs>
14 <data format="html" name="output" label="${tool.name} on ${on_string}: Alignment" />
15 </outputs>
16 <help>
17 **What it does**
18
19 From the MView website: http://bio-mview.sourceforge.net/
20
21 MView reformats the results of a sequence database search or a multiple alignment adding optional HTML markup to control coloring and webpage layout.
22
23 ------
24
25 **Inputs**
26
27 FASTA
28
29 ------
30
31 **Outputs**
32
33 HTML
34
35 -------
36
37 **Additional Information**
38
39 Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the osiris_phylogenetics site at bitbucket.org
40
41 -------
42
43 **Citations**
44
45 This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a publication, please consider
46 citing the following.
47
48 Current Osiris Citation is here
49
50 http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
51
52 Additional Citations for this tool
53
54 Citation for MView:
55
56 Brown, N.P., Leroy C., Sander C. (1998). MView: A Web compatible database search or multiple alignment viewer. Bioinformatics. 14(4):380-381.
57
58 </help>
59 </tool>