Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
comparison orthologs/hmmbuild.xml @ 0:5b9a38ec4a39 draft default tip
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| author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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| date | Tue, 11 Mar 2014 12:19:13 -0700 |
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| -1:000000000000 | 0:5b9a38ec4a39 |
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| 1 <tool id="phytab_hmmbuild" name="phytab HMMBUILD" version="3.0"> | |
| 2 <description>hmmbuild :: profile HMM construction from multiple sequence alignments in phytab format.</description> | |
| 3 <requirements> | |
| 4 <requirement type="package">hmmbuild</requirement> | |
| 5 </requirements> | |
| 6 <command interpreter="python"> | |
| 7 hmmbuild.py -i $data > $hmmbuild_stdout 2>&1 | |
| 8 </command> | |
| 9 <inputs> | |
| 10 <param format="txt" name="data" type="data" label="Sequence data" help="This should be sequence data from EvolMAP"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data format="txt" name="hmmbuild_stdout" label="${tool.name} on ${on_string}: stdout" /> | |
| 14 <data format="txt" name="hmmbuild_results" label="${tool.name} on ${on_string}: results" from_work_dir="data/results.data" /> | |
| 15 </outputs> | |
| 16 <tests> | |
| 17 </tests> | |
| 18 <help> | |
| 19 **hmmbuild v3.0** | |
| 20 | |
| 21 Runs hmmbuild on MUSCLE alignment data. | |
| 22 | |
| 23 See hmmbuild help: ftp://selab.janelia.org/pub/software/hmmer3/3.0/Userguide.pdf | |
| 24 </help> | |
| 25 </tool> |