Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
comparison orthologs/ucsb_hamster/translate.xml @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
| author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
|---|---|
| date | Tue, 11 Mar 2014 12:19:13 -0700 |
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| -1:000000000000 | 0:5b9a38ec4a39 |
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| 1 <tool id="translate" name="Translate"> | |
| 2 <description>Runs Translate</description> | |
| 3 <command interpreter="perl">translate.pl -infile=$inFile 2>log.txt</command> | |
| 4 <inputs> | |
| 5 <param name="inFile" type="data" format="fasta" label="fasta file" /> | |
| 6 | |
| 7 </inputs> | |
| 8 | |
| 9 <outputs> | |
| 10 <data format="fasta" label="Translated" from_work_dir="translate_tc.out" /> | |
| 11 </outputs> | |
| 12 | |
| 13 <help> | |
| 14 Translate is a part of Hamster. | |
| 15 | |
| 16 Note: Translate will only read the first 20 characters of a header. If there are identical | |
| 17 headers within your file, the script will crash. | |
| 18 | |
| 19 Input: FASTA file containing ESTs. | |
| 20 | |
| 21 </help> | |
| 22 </tool> | |
| 23 |