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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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1 <tool id="gb2phytab" name="GB2PHYTAB" version="1.0">
2 <description> Convert GenBank format flat file to PHYTAB tabular file </description>
3 <requirements>
4 <requirement type="package">raxml</requirement>
5 </requirements>
6 <command interpreter="perl">
7 gb2phytab.pl $data_file $outfile 2>&amp;1
8 </command>
9 <inputs>
10 <param format="txt" name="data_file" type="data" label="Genbank format infile." help="Can download from GenBank with get_gb and get_1_gb"/>
11 </inputs>
12 <outputs>
13 <data format="tabular" name="outfile" label="Phytab file from ${on_string}" />
14 </outputs>
15 <help>
16 **What it does**
17
18 This tool converts a file in the GenBank (NCBI) flat file format to the PHYTAB tabular format.
19
20 ------
21
22 **Inputs**
23
24 GenBank flat file format. Description: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord
25
26 ------
27
28 **Outputs**
29
30 PHYTAB tabular file format. Description::
31 http://osiris-phylogenetics.blogspot.com/2012/09/introduction-to-phytab-format.html
32
33 ------
34
35 **Additional Information**
36
37 Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the
38 osiris_phylogenetics site at bitbucket.org
39
40 ------
41
42 **Citations**
43
44 This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a
45 publication, please consider citing the following.
46
47 Current Osiris Citation is here
48
49 http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
50 </help>
51 </tool>