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diff orthologs/hmmbuild.xml @ 0:5b9a38ec4a39 draft default tip

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author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/orthologs/hmmbuild.xml	Tue Mar 11 12:19:13 2014 -0700
@@ -0,0 +1,25 @@
+<tool id="phytab_hmmbuild" name="phytab HMMBUILD" version="3.0">
+  <description>hmmbuild :: profile HMM construction from multiple sequence alignments in phytab format.</description>
+  <requirements>
+    <requirement type="package">hmmbuild</requirement>
+  </requirements>
+  <command interpreter="python">
+    hmmbuild.py -i $data > $hmmbuild_stdout 2>&amp;1
+  </command>
+  <inputs>
+    <param format="txt" name="data" type="data" label="Sequence data" help="This should be sequence data from EvolMAP"/>
+  </inputs>
+  <outputs>
+    <data format="txt" name="hmmbuild_stdout" label="${tool.name} on ${on_string}: stdout" />
+    <data format="txt" name="hmmbuild_results" label="${tool.name} on ${on_string}: results" from_work_dir="data/results.data" />
+  </outputs>
+  <tests>
+  </tests>
+  <help>
+  **hmmbuild v3.0**
+  
+  Runs hmmbuild on MUSCLE alignment data.
+
+  See hmmbuild help: ftp://selab.janelia.org/pub/software/hmmer3/3.0/Userguide.pdf
+  </help>
+</tool>