diff phyloconversion/addstring2fashead.xml @ 0:5b9a38ec4a39 draft default tip

First commit of old repositories
author osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu>
date Tue, 11 Mar 2014 12:19:13 -0700
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/phyloconversion/addstring2fashead.xml	Tue Mar 11 12:19:13 2014 -0700
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+<tool id="addstring2fashead" name="AddString2FAShead" version="1.0">
+    <description>Converts FASTA file with sequences from same species and gene family to PHYTAB format</description>
+    <command interpreter="perl">
+		addstring2fashead.pl $infile $species > $outfile
+			2>&amp;1
+    </command>
+    <inputs>
+	    <param name="infile" type="data" format="fasta" label="Input File" help="fasta file to convert" />
+	    <param name="species" type="text" format="tabular" label="Text string" help="" />
+    </inputs>
+    <outputs>
+	<data format="tabular" name="outfile" label="${tool.name} on ${on_string}: Out file" />
+    </outputs>
+    <help>
+**What it does**
+
+This tool adds a text string to the beginning of all headers of an input file in FASTA format. The FASTA 
+input file should have sequences from the same species and gene family. The output is a PHYTAB format file.  
+
+------
+
+**Inputs**
+
+FASTA file of sequences from same species and gene family. FASTA format: 
+http://www.ncbi.nlm.nih.gov/blast/blastcgihelp.shtml
+
+------
+
+**Outputs**
+
+PHYTAB file format. Description: 
+http://osiris-phylogenetics.blogspot.com/2012/09/introduction-to-phytab-format.html
+
+-------
+
+**Additional Information**
+
+Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the osiris_phylogenetics site at bitbucket.org
+
+------
+
+**Citations**
+
+This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a 
+publication, please consider citing the following.
+
+Current Osiris Citation is here
+
+http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
+    </help>
+</tool>