Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
diff phyloconversion/gb2phytab.xml @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/phyloconversion/gb2phytab.xml Tue Mar 11 12:19:13 2014 -0700 @@ -0,0 +1,51 @@ +<tool id="gb2phytab" name="GB2PHYTAB" version="1.0"> + <description> Convert GenBank format flat file to PHYTAB tabular file </description> + <requirements> + <requirement type="package">raxml</requirement> + </requirements> + <command interpreter="perl"> + gb2phytab.pl $data_file $outfile 2>&1 + </command> + <inputs> + <param format="txt" name="data_file" type="data" label="Genbank format infile." help="Can download from GenBank with get_gb and get_1_gb"/> + </inputs> + <outputs> + <data format="tabular" name="outfile" label="Phytab file from ${on_string}" /> + </outputs> + <help> +**What it does** + +This tool converts a file in the GenBank (NCBI) flat file format to the PHYTAB tabular format. + +------ + +**Inputs** + +GenBank flat file format. Description: http://www.ncbi.nlm.nih.gov/Sitemap/samplerecord + +------ + +**Outputs** + +PHYTAB tabular file format. Description:: +http://osiris-phylogenetics.blogspot.com/2012/09/introduction-to-phytab-format.html + +------ + +**Additional Information** + +Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the +osiris_phylogenetics site at bitbucket.org + +------ + +**Citations** + +This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a +publication, please consider citing the following. + +Current Osiris Citation is here + +http://osiris-phylogenetics.blogspot.com/2012/10/citation.html + </help> +</tool>