Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
diff phyloconversion/tnt2phytab.xml @ 0:5b9a38ec4a39 draft default tip
First commit of old repositories
author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/phyloconversion/tnt2phytab.xml Tue Mar 11 12:19:13 2014 -0700 @@ -0,0 +1,53 @@ +<tool id="tnt2table" name="TNT2PHYTAB" version="1.0"> + <description>Converts TNT text output from MorphoBank into PHYTAB format.</description> + <command interpreter="perl">tnt2phytab.pl $input > out</command> + <inputs> + <param name="input" format="txt" type="data" label="Input file" /> + </inputs> + + <outputs> + <data from_work_dir="out" format="tabular" /> + </outputs> + <help> +**What it does** + +TNT2PHYTAB takes an input TNT text file generated in Morphobank and converts it to PHYTAB file format. + +------ + +**Inputs** + +TNT text file generated in MorphoBank. + +Link to MorphoBank: http://www.morphobank.org/ + +------ + +**Outputs** + +PHYTAB file format. Description: http://osiris-phylogenetics.blogspot.com/2012/09/introduction-to-phytab-format.html + +------ + +**Additional Information** + +Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the +osiris_phylogenetics site at bitbucket.org + +------ + +**Citations** + +This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use of this tool in a +publication, please consider citing the following. + +Current Osiris Citation is here + +http://osiris-phylogenetics.blogspot.com/2012/10/citation.html + +Information about MorphoBank is here. + +http://www.morphobank.org/index.php/About/Index + </help> + +</tool>