Mercurial > repos > ucsb-phylogenetics > osiris_phylogenetics
view phyloconversion/addstring2fashead.pl @ 0:5b9a38ec4a39 draft default tip
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author | osiris_phylogenetics <ucsb_phylogenetics@lifesci.ucsb.edu> |
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date | Tue, 11 Mar 2014 12:19:13 -0700 |
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#!/usr/bin/perl -w use strict; use FindBin; use lib "$FindBin::Bin/lib"; #use Bio::DB::Fasta; use Bio::SeqIO; use Bio::Seq; # open infile fasta file my $in_obj = Bio::SeqIO->new(-file => $ARGV[0], '-format' =>'fasta'); my $currentinput = $ARGV[1]; # grab sequence object while (my $seq = $in_obj->next_seq() ) { my $seq_obj = $in_obj; print ">".$currentinput.$seq->id."\n"; print $seq->seq."\n"; }