<tool id="length_outliers" name="length_outliers" version="1.0">
    <description>Identifies sequences shorter than average in FASTA file</description>
    <command interpreter="perl">
		length_outliers.pl $infile $outfile1 $outfile2 $percent 
    </command>
    <inputs>
	    <param name="infile" type="data" format="fasta" label="Input File" help="FASTA file to convert" />
	    <param name="percent" type="integer" value = "50" label="Percent" help="Sequences less than this percent of average are deleted" />
    </inputs>
    <outputs>
	<data format="fasta" name="outfile1" label="Passed sequences${tool.name} on ${on_string}: Out file" />
	<data format="fasta" name="outfile2" label="Short sequences ${tool.name} on ${on_string}: Out file" />
    </outputs>
    <help>
**What it does**

Deletes sequences from a fasta file that are shorter than a specified percentage of the average of all sequences.

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**Inputs**

FASTA

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**Outputs**

2 FASTA files: one with sequences that are long enough, the other with sequences that are too short.

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**Additional Information**

Please direct questions or comments to ucsb_phylogenetics@lifesci.ucsb.edu or, if you can, enter them on the 
osiris_phylogenetics site at bitbucket.org

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**Citations**

This tool is part of the Osiris Phylogenetics Tool Package for Galaxy. If you make extensive use 
of this tool in a publication, please consider citing the following.

Current Osiris Citation is here

http://osiris-phylogenetics.blogspot.com/2012/10/citation.html
    </help>
</tool>