Mercurial > repos > ucsb-phylogenetics > ucsb_phylogenetics
view ucsb_phylogenetics/treeannotator/treeannotator.pl @ 5:eb55013e0f28 draft
Added tree annotator from BEAST.
author | ucsb-phylogenetics |
---|---|
date | Sun, 24 Jun 2012 16:16:58 -0400 |
parents | |
children |
line wrap: on
line source
#!/usr/bin/perl my $treeannotator_path = '/home/galaxy/pkgs/BEAST172/bin/treeannotator'; my $input = $ARGV[0]; my $burnin = $ARGV[1]; my $Node_heights = $ARGV[2]; my $node_opt; if($Node_heights eq "0") { $node_opt = "keep"; } elsif($Node_heights eq "1") { $node_opt = "median"; } elsif($Node_heights eq "2") { $node_opt = "mean"; } my $run = qx/$treeannotator_path -heights $node_opt -burnin $burnin $input out.tre 2>log.txt/; print $run;