Mercurial > repos > ufz > msh2vtu
annotate msh2vtu.xml @ 0:be04ecda594e draft default tip
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
| author | ufz |
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| date | Thu, 06 Mar 2025 16:53:19 +0000 |
| parents | |
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| rev | line source |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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1 |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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2 <tool id="msh2vtu" name="OGSTools msh2vtu" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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3 <description> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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4 Convert msh to UnstructuredGrid (vtk) |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
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5 </description> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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6 <macros> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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7 <import>macros.xml</import> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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8 <token name="@VERSION_SUFFIX@">0</token> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
changeset
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9 </macros> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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10 <expand macro="creator"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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11 <expand macro="requirements"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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12 <command detect_errors="exit_code"><![CDATA[ |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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13 ln -s '$input_file' input_file.msh && |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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14 msh2vtu input_file.msh |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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15 -d '$dim' |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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16 $delz $swapxy $reindex $keep_ids $ascii |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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17 -l '$log_level' |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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18 ]]></command> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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19 <inputs> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
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20 <param name="input_file" type="data" format="gmsh.msh" label="Input GMSH File"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
changeset
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21 <param name="dim" type="select" label="Set dimensionality of the mesh" argument="-d"> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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22 <option value="1">1D</option> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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23 <option value="2">2D</option> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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24 <option value="3">3D</option> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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25 </param> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
changeset
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26 <param name="delz" type="boolean" value="false" truevalue="-z" falsevalue="" label="Delete Z Coordinate" optional="true" argument="-z"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
changeset
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27 <param name="swapxy" type="boolean" value="false" truevalue="-s" falsevalue="" label="Swap XY Coordinates" optional="true" argument="-s"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
changeset
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28 <param name="reindex" type="boolean" value="false" truevalue="-r" falsevalue="" label="Reindex" optional="true" argument="-r"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
changeset
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29 <param name="keep_ids" type="boolean" value="false" truevalue="-k" falsevalue="" label="Keep IDs" optional="true" argument="-k"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
changeset
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30 <param name="ascii" type="boolean" value="false" truevalue="-a" falsevalue="" label="ASCII Output" optional="true" argument="-a"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
changeset
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31 <param name="log_level" type="select" label="Log Level" argument="-l"> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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32 <option value="ERROR" selected="true">ERROR</option> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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33 <option value="DEBUG">DEBUG</option> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
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34 <option value="INFO">INFO</option> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
diff
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35 <option value="WARNING">WARNING</option> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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36 </param> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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37 </inputs> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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38 <outputs> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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39 <data name="boundary" format="xml" label="${tool.name} on ${on_string}: boundary" from_work_dir="input_file_boundary.vtu" /> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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40 <data name="domain" format="xml" label="${tool.name} on ${on_string}: domain" from_work_dir="input_file_domain.vtu" /> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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41 <data name="physical_group_Bottom" format="xml" label="${tool.name} on ${on_string}: physical_group_Bottom" from_work_dir="input_file_physical_group_Bottom.vtu" /> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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42 <data name="physical_group_Left" format="xml" label="${tool.name} on ${on_string}: physical_group_Left" from_work_dir="input_file_physical_group_Left.vtu" /> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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43 <data name="physical_group_Right" format="xml" label="${tool.name} on ${on_string}: physical_group_Right" from_work_dir="input_file_physical_group_Right.vtu" /> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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44 <data name="physical_group_RockBed" format="xml" label="${tool.name} on ${on_string}: physical_group_RockBed" from_work_dir="input_file_physical_group_RockBed.vtu" /> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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45 <data name="physical_group_SedimentLayer1" format="xml" label="${tool.name} on ${on_string}: physical_group_SedimentLayer1" from_work_dir="input_file_physical_group_SedimentLayer1.vtu" /> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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46 <data name="physical_group_SedimentLayer2" format="xml" label="${tool.name} on ${on_string}: physical_group_SedimentLayer2" from_work_dir="input_file_physical_group_SedimentLayer2.vtu" /> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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47 <data name="physical_group_SedimentLayer3" format="xml" label="${tool.name} on ${on_string}: physical_group_SedimentLayer3" from_work_dir="input_file_physical_group_SedimentLayer3.vtu" /> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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48 <data name="physical_group_Top" format="xml" label="${tool.name} on ${on_string}: physical_group_Top" from_work_dir="input_file_physical_group_Top.vtu" /> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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49 </outputs> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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50 <tests> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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51 <test> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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52 <param name="input_file" value="geolayers_2d.msh"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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53 <param name="dim" value="2"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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54 <param name="delz" value="True"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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55 <param name="swapxy" value="True"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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56 <param name="reindex" value="True"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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57 <param name="keep_ids" value="True"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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58 <param name="ascii" value="True"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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59 <param name="log_level" value="DEBUG"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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60 <output name="boundary" file="input_file_boundary.vtu"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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61 <output name="domain" file="input_file_domain.vtu"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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62 <output name="physical_group_Bottom" file="input_file_physical_group_Bottom.vtu"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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63 <output name="physical_group_Left" file="input_file_physical_group_Left.vtu"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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64 <output name="physical_group_Right" file="input_file_physical_group_Right.vtu"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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65 <output name="physical_group_RockBed" file="input_file_physical_group_RockBed.vtu"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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66 <output name="physical_group_SedimentLayer1" file="input_file_physical_group_SedimentLayer1.vtu"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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67 <output name="physical_group_SedimentLayer2" file="input_file_physical_group_SedimentLayer2.vtu"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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68 <output name="physical_group_SedimentLayer3" file="input_file_physical_group_SedimentLayer3.vtu"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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69 <output name="physical_group_Top" file="input_file_physical_group_Top.vtu"/> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
parents:
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70 </test> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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71 </tests> |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
ufz
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72 <help><![CDATA[ |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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73 **Overview:** |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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74 |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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75 msh2vtu is a application that converts a Gmsh (.msh) file for use in OGS by extracting domain-, boundary- and physical group-submeshes and saves them in a set of files in the vtu format. |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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76 Supported element types: |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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77 - lines (linear and quadratic) in 1D |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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78 - triangles and quadrilaterals (linear and quadratic) in 2D |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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79 - tetra- and hexahedrons (linear and quadratic) in 3D |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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80 |
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be04ecda594e
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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81 **Inputs:** |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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82 |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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83 1. **Input GMSH File:** The GMSH (.msh) file to be converted. |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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84 2. **Mesh Dimension (dim):** Select the desired mesh dimension (1, 2, or 3). |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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85 3. **Delete Z Coordinate (delz):** Boolean flag to remove the Z coordinate from the mesh (for 2D meshes with z=0). |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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86 4. **Swap XY Coordinates (swapxy):** Boolean flag to swap the X and Y coordinates. |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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87 5. **Reindex (reindex):** Renumber physical group / region / Material IDs to be renumbered beginning with zero. |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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88 6. **Keep IDs (keep_ids):** By default, rename gmsh:physical to MaterialIDs and change type of corresponding cell data to INT32. If True, this is skipped. |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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89 7. **ASCII Output (ascii):** Boolean flag to output the file in ASCII format instead of binary. |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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90 8. **Log Level (log_level):** Set the level of logging details (DEBUG, INFO, WARNING, ERROR). |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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91 |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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92 **Outputs:** |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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93 |
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94 **Output VTU Files:** The converted mesh file as a set of files with VTU format. |
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95 ]]></help> |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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96 <expand macro="ogs_citation"/> |
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planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogstools commit 406e30ee3cd2ab7762f1195328c06d547516690f
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97 </tool> |