Mercurial > repos > ufz > ogs_addlayer

comparison addLayer.xml @ 0:0decc57edb57 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
author ufz
date Thu, 06 Mar 2025 17:29:05 +0000
parents
children f14ae821c3ac
comparison
equal deleted inserted replaced
-1:000000000000 0:0decc57edb57
1 <tool id="ogs_addlayer" name="OGS addLayer" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>
3 Adds a layer to an existing mesh
4 </description>
5 <macros>
6 <import>macros.xml</import>
7 <token name="@VERSION_SUFFIX@">0</token>
8 </macros>
9 <requirements>
10 <expand macro="ogs_requirement"/>
11 </requirements>
12 <expand macro="creator"/>
13 <command detect_errors="exit_code"><![CDATA[
14 ln -s '$input_mesh' input.vtu &&
15 AddLayer -i input.vtu -o output.vtu -t '$layer_thickness'
16 $add_layer_on_bottom
17 #if str($material_option.material_id) == "copy":
18 --copy-material-ids
19 #elif str($material_option.material_id) == "set":
20 --set-material-id $material_option.set_material_id
21 #end if
22
23 ]]></command>
24 <inputs>
25 <param name="input_mesh" type="data" format="vtkxml" label="Input Mesh File" argument="-i"/>
26 <param name="layer_thickness" type="float" label="Layer Thickness" argument="-t"/>
27 <param name="add_layer_on_bottom" type="boolean" value="false" truevalue="--add-layer-on-bottom" falsevalue="" label="Add Layer To Bottom"/>
28 <conditional name="material_option">
29 <param name="material_id" type="select" label="Material ID Option">
30 <option value="none">Leave as it is</option>
31 <option value="copy">Copy existing material IDs</option>
32 <option value="set">Set a specific material ID</option>
33 </param>
34 <when value="none"/>
35 <when value="copy"/>
36 <when value="set">
37 <param name="set_material_id" type="integer" label="Set Material IDs"/>
38 </when>
39 </conditional>
40 </inputs>
41 <outputs>
42 <data name="output_mesh" format="vtkxml" from_work_dir="output.vtu" />
43 </outputs>
44 <tests>
45 <test>
46 <param name="input_mesh" value="tm_a_quad.vtu"/>
47 <param name="layer_thickness" value="15.0"/>
48 <param name="add_layer_on_bottom" value="false"/>
49 <param name="material_option|material_id" value="set"/>
50 <param name="material_option|set_material_id" value="1"/>
51 <output name="output_mesh" value="tm_a_quad_with_extra_layer.vtu"/>
52 </test>
53 </tests>
54 <help><![CDATA[
55 **Overview:**
56
57 This Galaxy tool adds a new layer to an existing mesh using the OpenGeoSys library. It processes meshes in the VTU (Visualization Toolkit Unstructured Grid) format.
58
59 **Inputs:**
60
61 1. **Input Mesh File (`input_mesh`)** The VTU file containing the existing mesh to which a new layer will be added.
62 2. **Layer Thickness (`layer_thickness`)** Specifies the thickness of the new layer to be added. The default value is `10.0`.
63 3. **Add Layer to Bottom (`add_layer_on_bottom`)** If selected, the layer is added to the bottom of the mesh. Otherwise, it is added to the top.
64 4. **Material ID Option (`material_option`)** Determines how material IDs for the new layer are managed:
65 - `Copy`: Copies existing material IDs to the new layer.
66 - `Set`: Sets a specific material ID for the new layer.
67
68 **Outputs:**
69
70 **Output Mesh File (`output_mesh`)** The resulting mesh file in VTU format with the added layer.
71 ]]></help>
72 <expand macro="ogs_citation"/>
73 </tool>