Mercurial > repos > ufz > ogs_generatestructuredmesh

annotate generateStructuredMesh.xml @ 0:4e31c396004d draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
author ufz
date Thu, 06 Mar 2025 17:29:28 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
1 <tool id="ogs_generatestructuredmesh" name="OGS generateStructuredMesh" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
2 <description>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
3 Generation of simple meshes
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
4 </description>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
5 <macros>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
6 <import>macros.xml</import>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
7 <token name="@VERSION_SUFFIX@">0</token>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
8 </macros>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
9 <requirements>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
10 <expand macro="ogs_requirement"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
11 </requirements>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
12 <expand macro="creator"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
13 <command detect_errors="exit_code"><![CDATA[
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
14 generateStructuredMesh
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
15 -o output.$output_ext
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
16 -e $element_type
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
17 #if str($length_x) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
18 --lx $length_x
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
19 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
20 #if str($length_y) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
21 --ly $length_y
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
22 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
23 #if str($length_z) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
24 --lz $length_z
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
25 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
26 #if str($subdiv_x) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
27 --nx $subdiv_x
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
28 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
29 #if str($subdiv_y) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
30 --ny $subdiv_y
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
31 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
32 #if str($subdiv_z) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
33 --nz $subdiv_z
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
34 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
35 #if str($element_length_x) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
36 --dx0 $element_length_x
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
37 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
38 #if str($element_length_y) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
39 --dy0 $element_length_y
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
40 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
41 #if str($element_length_z) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
42 --dz0 $element_length_z
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
43 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
44 #if str($max_element_length_x) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
45 --dx-max $max_element_length_x
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
46 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
47 #if str($max_element_length_y) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
48 --dy-max $max_element_length_y
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
49 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
50 #if str($max_element_length_z) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
51 --dz-max $max_element_length_z
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
52 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
53 #if str($multiplier_x) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
54 --mx $multiplier_x
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
55 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
56 #if str($multiplier_y) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
57 --my $multiplier_y
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
58 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
59 #if str($multiplier_z) != "":
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
60 --mz $multiplier_z
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
61 #end if
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
62 && mv output.$output_ext '$output'
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
63
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
64 ]]></command>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
65 <inputs>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
66 <param name="output_ext" type="select" label="Output File Format" argument="-o">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
67 <option value="vtu">VTK Unstructured Grid</option>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
68 <option value="msh">GMSH</option>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
69 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
70 <param name="element_type" type="select" label="Element Type" argument="-e">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
71 <option value="line">Line</option>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
72 <option value="tri">Triangle</option>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
73 <option value="quad">Quadrilateral</option>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
74 <option value="hex">Hexahedron</option>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
75 <option value="prism">Prism</option>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
76 <option value="tet">Tetrahedron</option>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
77 <option value="pyramid">Pyramid</option>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
78 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
79 <param name="length_x" type="float" min="0" optional="true" label="Length in X" help="Length of the domain in the X direction.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
80 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
81 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
82 <param name="length_y" type="float" min="0" optional="true" label="Length in Y" help="Length of the domain in the Y direction.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
83 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
84 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
85 <param name="length_z" type="float" min="0" optional="true" label="Length in Z" help="Length of the domain in the Z direction.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
86 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
87 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
88 <param name="subdiv_x" type="integer" min="1" optional="true" label="Subdivisions in X" help="Number of subdivisions in the X direction. Overrides element length argument."/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
89 <param name="subdiv_y" type="integer" min="1" optional="true" label="Subdivisions in Y" help="Number of subdivisions in the Y direction. Overrides element length argument."/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
90 <param name="subdiv_z" type="integer" min="1" optional="true" label="Subdivisions in Z" help="Number of subdivisions in the Z direction. Overrides element length argument."/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
91 <param name="element_length_x" type="float" min="0" optional="true" label="Initial Element Length X" help="Initial element length in the X direction. If the value of this parameter is smaller than subdivions or maximum length parameters it gets overridden.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
92 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
93 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
94 <param name="element_length_y" type="float" min="0" optional="true" label="Initial Element Length Y" help="Initial element length in the Y direction. If the value of this parameter is smaller than subdivions or maximum length parameters it gets overridden.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
95 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
96 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
97 <param name="element_length_z" type="float" min="0" optional="true" label="Initial Element Length Z" help="Initial element length in the Z direction. If the value of this parameter is smaller than subdivions or maximum length parameters it gets overridden.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
98 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
99 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
100 <param name="max_element_length_x" type="float" min="0" optional="true" label="Maximum Element Length X" help="Maximum element length in the X direction. Overrides element length argument.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
101 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
102 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
103 <param name="max_element_length_y" type="float" min="0" optional="true" label="Maximum Element Length Y" help="Maximum element length in the Y direction. Overrides element length argument.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
104 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
105 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
106 <param name="max_element_length_z" type="float" min="0" optional="true" label="Maximum Element Length Z" help="Maximum element length in the Z direction. Overrides element length argument.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
107 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
108 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
109 <param name="multiplier_x" type="float" min="0" optional="true" label="Multiplier X" help="Multiplier for element lengths in the X direction.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
110 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
111 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
112 <param name="multiplier_y" type="float" min="0" optional="true" label="Multiplier Y" help="Multiplier for element lengths in the Y direction.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
113 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
114 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
115 <param name="multiplier_z" type="float" min="0" optional="true" label="Multiplier Z" help="Multiplier for element lengths in the Z direction.">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
116 <validator type="in_range" min="0" exclude_min="true"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
117 </param>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
118 </inputs>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
119 <outputs>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
120 <data format="vtkxml" name="output">
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
121 <change_format>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
122 <when input="output_ext" value="msh" format="gmsh.msh"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
123 </change_format>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
124 </data>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
125 </outputs>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
126 <tests>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
127 <test>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
128 <param name="output_ext" value="vtu"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
129 <param name="element_type" value="quad"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
130 <param name="length_x" value="3"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
131 <param name="length_y" value="4"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
132 <output name="output" value="quad_3x4.vtu" ftype="vtkxml"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
133 </test>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
134 <test>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
135 <param name="output_ext" value="msh"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
136 <param name="element_type" value="hex"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
137 <param name="length_x" value="4"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
138 <param name="length_y" value="5"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
139 <param name="length_z" value="6"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
140 <param name="multiplier_x" value="0.8"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
141 <param name="multiplier_y" value="1.1"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
142 <param name="multiplier_z" value="2"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
143 <param name="max_element_length_z" value="1"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
144 <param name="element_length_y" value="0.1"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
145 <param name="element_length_z" value="0.1"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
146 <output name="output" value="hex_4x5x6.msh"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
147 </test>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
148 </tests>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
149 <help><![CDATA[
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
150
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
151 **Overview:**
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
152 This tool generates structured meshes using the OpenGeoSys Mesh Generator.
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
153 Users can define the element type, dimensions, subdivisions, and other parameters to create a customized mesh.
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
154 Output data is written in the specified format (VTU/ VTK Unstructured Grid or GMSH).
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
155
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
156 **Inputs:**
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
157 1. **Output Format:** The format of the output file (.vtu or .msh)
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
158 2. **Element Type:** The type of element to create (e.g., line, triangle, quadrilateral, etc.).
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
159 3. **Length (X, Y, Z):** The length of the mesh domain in the X, Y, and Z directions.
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
160 4. **Subdivisions (X, Y, Z):** Number of subdivisions in each direction to define mesh resolution.
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
161 5. **Initial Element Length (X, Y, Z):** Initial size of the elements in the X, Y, and Z directions.
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
162 6. **Maximum Element Length (X, Y, Z):** Maximum size of elements for gradual refinement.
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
163 7. **Multiplier (X, Y, Z):** Refinement multiplier for element lengths in each direction.
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
164
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
165 **Outputs:**
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
166
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
167 **Output Mesh File:** The generated structured mesh saved as a file in the specified format.
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
168 ]]></help>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
169 <expand macro="ogs_citation"/>
4e31c396004d planemo upload for repository https://github.com/Helmholtz-UFZ/galaxy-tools/tree/main/tools/ogs/ commit 8d522c2d14b28a4df096a5a13cd800bbf086f09f
ufz
parents:
diff changeset
170 </tool>