Mercurial > repos > ufz > phabox_phamer

comparison phamer.xml @ 1:724fcc6ee63b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phabox commit 52385539f64c4e46c2e8953588efa3ea01bb99fd
author ufz
date Wed, 16 Apr 2025 09:43:34 +0000
parents d0ebd3f37125
children
comparison
equal deleted inserted replaced
0:d0ebd3f37125 1:724fcc6ee63b
22 <data name="phamer_out" format="tabular" from_work_dir="output/final_prediction/phamer_prediction.tsv"/> 22 <data name="phamer_out" format="tabular" from_work_dir="output/final_prediction/phamer_prediction.tsv"/>
23 </outputs> 23 </outputs>
24 <tests> 24 <tests>
25 <test> 25 <test>
26 <param name="dbdir" value="phaboxdb"/> 26 <param name="dbdir" value="phaboxdb"/>
27 <param name="contigs" value="example_contigs.fa"/> 27 <param name="contigs" value="example_contigs.fa" location="https://github.com/KennthShang/PhaBOX/releases/download/v2/example_contigs.fa"/>
28 <output name="phamer_out"> 28 <output name="phamer_out">
29 <assert_contents> 29 <assert_contents>
30 <has_line line="Accession&#9;Length&#9;Pred&#9;Proportion&#9;PhaMerScore&#9;PhaMerConfidence"/> 30 <has_line line="Accession&#9;Length&#9;Pred&#9;Proportion&#9;PhaMerScore&#9;PhaMerConfidence"/>
31 <has_n_lines n="11"/> <!-- 1 per input sequence--> 31 <has_n_lines n="391"/> <!-- 1 per input sequence-->
32 <has_n_columns n="6"/> 32 <has_n_columns n="6"/>
33 </assert_contents> 33 </assert_contents>
34 </output> 34 </output>
35 </test> 35 </test>
36 </tests> 36 </tests>