Mercurial > repos > ufz > phabox_phavip
comparison phavip.xml @ 1:4844d9472fa6 draft default tip
planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phabox commit 52385539f64c4e46c2e8953588efa3ea01bb99fd
| author | ufz |
|---|---|
| date | Wed, 16 Apr 2025 09:43:30 +0000 |
| parents | f5dba8d92cf0 |
| children |
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| 0:f5dba8d92cf0 | 1:4844d9472fa6 |
|---|---|
| 26 </data> | 26 </data> |
| 27 </outputs> | 27 </outputs> |
| 28 <tests> | 28 <tests> |
| 29 <test expect_num_outputs="1"> | 29 <test expect_num_outputs="1"> |
| 30 <param name="dbdir" value="phaboxdb"/> | 30 <param name="dbdir" value="phaboxdb"/> |
| 31 <param name="contigs" value="example_contigs.fa"/> | 31 <param name="contigs" value="example_contigs.fa" location="https://github.com/KennthShang/PhaBOX/releases/download/v2/example_contigs.fa"/> |
| 32 <output name="out"> | 32 <output name="out"> |
| 33 <assert_contents> | 33 <assert_contents> |
| 34 <has_line line="Accession	Length	Protein_num	Annotated_num	Annotation_rate"/> | 34 <has_line line="Accession	Length	Protein_num	Annotated_num	Annotation_rate"/> |
| 35 <has_n_lines n="11"/> | 35 <has_n_lines n="391"/> |
| 36 <has_n_columns n="5"/> | 36 <has_n_columns n="5"/> |
| 37 </assert_contents> | 37 </assert_contents> |
| 38 </output> | 38 </output> |
| 39 </test> | 39 </test> |
| 40 <test expect_num_outputs="2"> | 40 <test expect_num_outputs="2"> |
| 41 <param name="dbdir" value="phaboxdb"/> | 41 <param name="dbdir" value="phaboxdb"/> |
| 42 <param name="contigs" value="example_contigs.fa"/> | 42 <param name="contigs" value="example_contigs.fa" location="https://github.com/KennthShang/PhaBOX/releases/download/v2/example_contigs.fa"/> |
| 43 <param name="supp_outputs" value="gene_annotation"/> | 43 <param name="supp_outputs" value="gene_annotation"/> |
| 44 <output name="out"> | 44 <output name="out"> |
| 45 <assert_contents> | 45 <assert_contents> |
| 46 <has_line line="Accession	Length	Protein_num	Annotated_num	Annotation_rate"/> | 46 <has_line line="Accession	Length	Protein_num	Annotated_num	Annotation_rate"/> |
| 47 <has_n_lines n="11"/> | 47 <has_n_lines n="391"/> |
| 48 <has_n_columns n="5"/> | 48 <has_n_columns n="5"/> |
| 49 </assert_contents> | 49 </assert_contents> |
| 50 </output> | 50 </output> |
| 51 <output name="phavip_annotation"> | 51 <output name="phavip_annotation"> |
| 52 <assert_contents> | 52 <assert_contents> |
| 53 <has_line line="Genome	ORF	Start	End	Strand	GC	Annotation	pident	coverage"/> | 53 <has_line line="Genome	ORF	Start	End	Strand	GC	Annotation	pident	coverage"/> |
| 54 <has_n_lines n="171"/> | 54 <has_n_lines n="8995"/> |
| 55 <has_n_columns n="9"/> | 55 <has_n_columns n="9"/> |
| 56 </assert_contents> | 56 </assert_contents> |
| 57 </output> | 57 </output> |
| 58 </test> | 58 </test> |
| 59 </tests> | 59 </tests> |