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comparison tree.xml @ 1:ffeed1c58086 draft default tip

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planemo upload for repository https://github.com/Helmholtz-UFZ/ufz-galaxy-tools/blob/main/tools/phabox commit 52385539f64c4e46c2e8953588efa3ea01bb99fd
author ufz
date Wed, 16 Apr 2025 09:43:42 +0000
parents daaab891f936
children
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0:daaab891f936 1:ffeed1c58086
18 <expand macro="general"/> 18 <expand macro="general"/>
19 <expand macro="tree"/> 19 <expand macro="tree"/>
20 </inputs> 20 </inputs>
21 <outputs> 21 <outputs>
22 <collection name="marker_genes" format="fasta" type="list"> 22 <collection name="marker_genes" format="fasta" type="list">
23 <discover_datasets pattern="finded_marker_(?P&lt;designation&gt;.+)_conbined_db.fa" directory="output/final_prediction/tree_supplementary"/> 23 <discover_datasets pattern="found_marker_(?P&lt;designation&gt;.+)_combined_db.fa" directory="output/final_prediction/tree_supplementary"/>
24 </collection> 24 </collection>
25 </outputs> 25 </outputs>
26 <tests> 26 <tests>
27 <test expect_num_outputs="1"> 27 <test expect_num_outputs="1">
28 <param name="dbdir" value="phaboxdb"/> 28 <param name="dbdir" value="phaboxdb"/>
29 <param name="contigs" value="example_contigs.fa"/> 29 <param name="contigs" value="example_contigs.fa" location="https://github.com/KennthShang/PhaBOX/releases/download/v2/example_contigs.fa"/>
30 <output_collection name="marker_genes" count="2"> 30 <output_collection name="marker_genes" count="2">
31 <element name="portal"> 31 <element name="portal">
32 <assert_contents> 32 <assert_contents>
33 <has_text text=">" n="4176"/> 33 <has_text text=">" n="4281"/>
34 </assert_contents> 34 </assert_contents>
35 </element> 35 </element>
36 <element name="terl"> 36 <element name="terl">
37 <assert_contents> 37 <assert_contents>
38 <has_text text=">" n="4570"/> 38 <has_text text=">" n="4672"/>
39 </assert_contents> 39 </assert_contents>
40 </element> 40 </element>
41 </output_collection> 41 </output_collection>
42 </test> 42 </test>
43 </tests> 43 </tests>