<tool id="client_61" name="run">
  <description> Client for operation : run , Web service : clustalw2.clustalw2_services </description>
  <command interpreter="python">
  	client_1.py
	#if $cond_source.optional_param_source=="no":
  	$output
	$servicetype
      $url
      $method
clustalw2.clustalw2_services         run
	"_email"
	 #if $source0.source0_source=="user":
	 $source0.user_param0
	 #else:
	 fileInput
	 $source0.cached_param0
	 #end if
   	#else:
  	$output
	$servicetype
      $url
      $method
clustalw2.clustalw2_services            run
	"_email"
	 #if $source0.source0_source=="user":
	 $source0.user_param0
	 #else:
	 fileInput
	 $source0.cached_param0
	 #end if
	"_parameters|_sequence"
	 #if $cond_source.source1.source1_source=="user":
	 $cond_source.source1.user_param1
	 #else:
	 fileInput
	 $cond_source.source1.cached_param1
	 #end if
	"_parameters|_pwmatrix"
	 #if $cond_source.source2.source2_source=="user":
	 $cond_source.source2.user_param2
	 #else:
	 fileInput
	 $cond_source.source2.cached_param2
	 #end if
	"_parameters|_dnamatrix"
	 #if $cond_source.source3.source3_source=="user":
	 $cond_source.source3.user_param3
	 #else:
	 fileInput
	 $cond_source.source3.cached_param3
	 #end if
	"_parameters|_gapopen"
	 #if $cond_source.source4.source4_source=="user":
	 $cond_source.source4.user_param4
	 #else:
	 fileInput
	 $cond_source.source4.cached_param4
	 #end if
	"_parameters|_pairgap"
	 #if $cond_source.source5.source5_source=="user":
	 $cond_source.source5.user_param5
	 #else:
	 fileInput
	 $cond_source.source5.cached_param5
	 #end if
	"_parameters|_pwdnamatrix"
	 #if $cond_source.source6.source6_source=="user":
	 $cond_source.source6.user_param6
	 #else:
	 fileInput
	 $cond_source.source6.cached_param6
	 #end if
	"_parameters|_outorder"
	 #if $cond_source.source7.source7_source=="user":
	 $cond_source.source7.user_param7
	 #else:
	 fileInput
	 $cond_source.source7.cached_param7
	 #end if
	"_parameters|_iteration"
	 #if $cond_source.source8.source8_source=="user":
	 $cond_source.source8.user_param8
	 #else:
	 fileInput
	 $cond_source.source8.cached_param8
	 #end if
	"_parameters|_noendgaps"
	 #if $cond_source.source9.source9_source=="user":
	 $cond_source.source9.user_param9
	 #else:
	 fileInput
	 $cond_source.source9.cached_param9
	 #end if
	"_parameters|_pwgapopen"
	 #if $cond_source.source10.source10_source=="user":
	 $cond_source.source10.user_param10
	 #else:
	 fileInput
	 $cond_source.source10.cached_param10
	 #end if
	"_parameters|_ktup"
	 #if $cond_source.source11.source11_source=="user":
	 $cond_source.source11.user_param11
	 #else:
	 fileInput
	 $cond_source.source11.cached_param11
	 #end if
	"_parameters|_alignment"
	 #if $cond_source.source12.source12_source=="user":
	 $cond_source.source12.user_param12
	 #else:
	 fileInput
	 $cond_source.source12.cached_param12
	 #end if
	"_parameters|_matrix"
	 #if $cond_source.source13.source13_source=="user":
	 $cond_source.source13.user_param13
	 #else:
	 fileInput
	 $cond_source.source13.cached_param13
	 #end if
	"_parameters|_score"
	 #if $cond_source.source14.source14_source=="user":
	 $cond_source.source14.user_param14
	 #else:
	 fileInput
	 $cond_source.source14.cached_param14
	 #end if
	"_title"
	 #if $cond_source.source15.source15_source=="user":
	 $cond_source.source15.user_param15
	 #else:
	 fileInput
	 $cond_source.source15.cached_param15
	 #end if
	"_parameters|_gapext"
	 #if $cond_source.source16.source16_source=="user":
	 $cond_source.source16.user_param16
	 #else:
	 fileInput
	 $cond_source.source16.cached_param16
	 #end if
	"_parameters|_clustering"
	 #if $cond_source.source17.source17_source=="user":
	 $cond_source.source17.user_param17
	 #else:
	 fileInput
	 $cond_source.source17.cached_param17
	 #end if
	"_parameters|_numiter"
	 #if $cond_source.source18.source18_source=="user":
	 $cond_source.source18.user_param18
	 #else:
	 fileInput
	 $cond_source.source18.cached_param18
	 #end if
	"_parameters|_pwgapext"
	 #if $cond_source.source19.source19_source=="user":
	 $cond_source.source19.user_param19
	 #else:
	 fileInput
	 $cond_source.source19.cached_param19
	 #end if
	"_parameters|_topdiags"
	 #if $cond_source.source20.source20_source=="user":
	 $cond_source.source20.user_param20
	 #else:
	 fileInput
	 $cond_source.source20.cached_param20
	 #end if
	"_parameters|_window"
	 #if $cond_source.source21.source21_source=="user":
	 $cond_source.source21.user_param21
	 #else:
	 fileInput
	 $cond_source.source21.cached_param21
	 #end if
	"_parameters|_gapdist"
	 #if $cond_source.source22.source22_source=="user":
	 $cond_source.source22.user_param22
	 #else:
	 fileInput
	 $cond_source.source22.cached_param22
	 #end if
	"_parameters|_type"
	 #if $cond_source.source23.source23_source=="user":
	 $cond_source.source23.user_param23
	 #else:
	 fileInput
	 $cond_source.source23.cached_param23
	 #end if
	"_parameters|_output"
	 #if $cond_source.source24.source24_source=="user":
	 $cond_source.source24.user_param24
	 #else:
	 fileInput
	 $cond_source.source24.cached_param24
	 #end if
   	#end if
</command>
  <inputs>
     <param name="servicetype" type="hidden" value="SOAP" />
     <param name="url" type="hidden" value="http://www.ebi.ac.uk/Tools/services/soap/clustalw2?wsdl" />
     <param name="method" type="hidden" value="run" />
<conditional name="source0">
    <param name="source0_source" type="select" label="email Source"> 
      <option value="cached" selected="true">Param value will be taken from previous step</option> 
      <option value="user">User will enter the param value</option> 
    </param>
    <when value="user">
      <param format="text" size = "150" name = "user_param0"  type="text" label="Enter email" help="see tip below" />
 </when>
 <when value="cached">
    <param name = "cached_param0" type="data" label="Choose the step from which to get the parameter email"/> 
 </when>
   </conditional>  <conditional name="cond_source">
  <param name="optional_param_source" type="select" label="Display Additional Parameters"> 
 <option value="no" selected="true">no</option> 
 <option value="yes">yes</option> 
 </param> 
    <when value="no"> 
     </when>
    <when value="yes"> 

<conditional name="source1">
  <param name="source1_source" type="select" label="sequence Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param1"  type="text" label="Enter sequence" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param1" type="data" label="Choose the step from which to get the parameter sequence"/> 
  </when>
   </conditional>

<conditional name="source2">
  <param name="source2_source" type="select" label="pwmatrix Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param2"  type="text" label="Enter pwmatrix" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param2" type="data" label="Choose the step from which to get the parameter pwmatrix"/> 
  </when>
   </conditional>

<conditional name="source3">
  <param name="source3_source" type="select" label="dnamatrix Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param3"  type="text" label="Enter dnamatrix" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param3" type="data" label="Choose the step from which to get the parameter dnamatrix"/> 
  </when>
   </conditional>

<conditional name="source4">
  <param name="source4_source" type="select" label="gapopen Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param4"  type="text" label="Enter gapopen" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param4" type="data" label="Choose the step from which to get the parameter gapopen"/> 
  </when>
   </conditional>

<conditional name="source5">
  <param name="source5_source" type="select" label="pairgap Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param5"  type="text" label="Enter pairgap" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param5" type="data" label="Choose the step from which to get the parameter pairgap"/> 
  </when>
   </conditional>

<conditional name="source6">
  <param name="source6_source" type="select" label="pwdnamatrix Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param6"  type="text" label="Enter pwdnamatrix" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param6" type="data" label="Choose the step from which to get the parameter pwdnamatrix"/> 
  </when>
   </conditional>

<conditional name="source7">
  <param name="source7_source" type="select" label="outorder Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param7"  type="text" label="Enter outorder" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param7" type="data" label="Choose the step from which to get the parameter outorder"/> 
  </when>
   </conditional>

<conditional name="source8">
  <param name="source8_source" type="select" label="iteration Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param8"  type="text" label="Enter iteration" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param8" type="data" label="Choose the step from which to get the parameter iteration"/> 
  </when>
   </conditional>

<conditional name="source9">
  <param name="source9_source" type="select" label="noendgaps Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param9"  type="text" label="Enter noendgaps" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param9" type="data" label="Choose the step from which to get the parameter noendgaps"/> 
  </when>
   </conditional>

<conditional name="source10">
  <param name="source10_source" type="select" label="pwgapopen Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param10"  type="text" label="Enter pwgapopen" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param10" type="data" label="Choose the step from which to get the parameter pwgapopen"/> 
  </when>
   </conditional>

<conditional name="source11">
  <param name="source11_source" type="select" label="ktup Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param11"  type="text" label="Enter ktup" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param11" type="data" label="Choose the step from which to get the parameter ktup"/> 
  </when>
   </conditional>

<conditional name="source12">
  <param name="source12_source" type="select" label="alignment Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param12"  type="text" label="Enter alignment" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param12" type="data" label="Choose the step from which to get the parameter alignment"/> 
  </when>
   </conditional>

<conditional name="source13">
  <param name="source13_source" type="select" label="matrix Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param13"  type="text" label="Enter matrix" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param13" type="data" label="Choose the step from which to get the parameter matrix"/> 
  </when>
   </conditional>

<conditional name="source14">
  <param name="source14_source" type="select" label="score Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param14"  type="text" label="Enter score" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param14" type="data" label="Choose the step from which to get the parameter score"/> 
  </when>
   </conditional>

<conditional name="source15">
  <param name="source15_source" type="select" label="title Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param15"  type="text" label="Enter title" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param15" type="data" label="Choose the step from which to get the parameter title"/> 
  </when>
   </conditional>

<conditional name="source16">
  <param name="source16_source" type="select" label="gapext Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param16"  type="text" label="Enter gapext" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param16" type="data" label="Choose the step from which to get the parameter gapext"/> 
  </when>
   </conditional>

<conditional name="source17">
  <param name="source17_source" type="select" label="clustering Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param17"  type="text" label="Enter clustering" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param17" type="data" label="Choose the step from which to get the parameter clustering"/> 
  </when>
   </conditional>

<conditional name="source18">
  <param name="source18_source" type="select" label="numiter Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param18"  type="text" label="Enter numiter" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param18" type="data" label="Choose the step from which to get the parameter numiter"/> 
  </when>
   </conditional>

<conditional name="source19">
  <param name="source19_source" type="select" label="pwgapext Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param19"  type="text" label="Enter pwgapext" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param19" type="data" label="Choose the step from which to get the parameter pwgapext"/> 
  </when>
   </conditional>

<conditional name="source20">
  <param name="source20_source" type="select" label="topdiags Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param20"  type="text" label="Enter topdiags" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param20" type="data" label="Choose the step from which to get the parameter topdiags"/> 
  </when>
   </conditional>

<conditional name="source21">
  <param name="source21_source" type="select" label="window Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param21"  type="text" label="Enter window" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param21" type="data" label="Choose the step from which to get the parameter window"/> 
  </when>
   </conditional>

<conditional name="source22">
  <param name="source22_source" type="select" label="gapdist Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param22"  type="text" label="Enter gapdist" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param22" type="data" label="Choose the step from which to get the parameter gapdist"/> 
  </when>
   </conditional>

<conditional name="source23">
  <param name="source23_source" type="select" label="type Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param23"  type="text" label="Enter type" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param23" type="data" label="Choose the step from which to get the parameter type"/> 
  </when>
   </conditional>

<conditional name="source24">
  <param name="source24_source" type="select" label="output Source"> 
    <option value="cached" selected="true">Param value will be taken from previous step</option> 
 <option value="user">User will enter the param value</option> 
</param>
         <when value="user"><param format="text" size = "150" name = "user_param24"  type="text" label="Enter output" help="see tip below" />
 </when>
<when value="cached">
 <param name = "cached_param24" type="data" label="Choose the step from which to get the parameter output"/> 
  </when>
   </conditional>
 </when>
 </conditional>
</inputs>
  <outputs>
    <data format="tabular" name="output" />
  </outputs>
  <help>

.. class:: infomark

**TIP:** About email: type is String
  </help>
</tool>