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comparison filter_vcf.sh @ 0:834a312c0114 draft

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author ulfschaefer
date Thu, 10 Dec 2015 09:22:39 -0500
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-1:000000000000 0:834a312c0114
1 #!/bin/bash
2
3 OUTPUT=$1
4 shift
5 VCF=$1
6 shift
7 FILTERS=$@
8
9 FILTERS=$(echo -n $FILTERS | sed 's/ /,/g')
10
11 CMD="filter_vcf.py --vcf $VCF --filters $FILTERS --output $OUTPUT"
12
13 echo "CMD: "$CMD
14 eval $CMD