Mercurial > repos > ulfschaefer > filter_vcf
view filter_vcf.sh @ 2:b05ed83dc773 draft
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author | ulfschaefer |
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date | Fri, 11 Dec 2015 09:41:41 -0500 |
parents | 834a312c0114 |
children |
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#!/bin/bash OUTPUT=$1 shift VCF=$1 shift FILTERS=$@ FILTERS=$(echo -n $FILTERS | sed 's/ /,/g') CMD="filter_vcf.py --vcf $VCF --filters $FILTERS --output $OUTPUT" echo "CMD: "$CMD eval $CMD