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view filter_vcf.sh @ 1:b3fe10e4b93f draft

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author ulfschaefer
date Fri, 11 Dec 2015 09:40:42 -0500
parents 834a312c0114
children
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#!/bin/bash

OUTPUT=$1
shift
VCF=$1
shift
FILTERS=$@

FILTERS=$(echo -n $FILTERS | sed 's/ /,/g')

CMD="filter_vcf.py --vcf $VCF --filters $FILTERS --output $OUTPUT"

echo "CMD: "$CMD
eval $CMD