comparison tool_dependencies.xml @ 0:a5fe4836eb99 draft

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author ulfschaefer
date Fri, 08 Jul 2016 09:49:57 -0400
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1 <?xml version='1.0' encoding='utf-8'?>
2 <tool_dependency>
3 <package name="python" version="2.7.10">
4 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="lxml" version="3.2.3">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">http://pypi.python.org/packages/source/l/lxml/lxml-3.2.3.tar.gz</action>
10 <action type="set_environment_for_install">
11 <repository changeset_revision="a28e3c30828d" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
12 <package name="python" version="2.7.10" />
13 </repository>
14 </action>
15 <action type="make_directory">$INSTALL_DIR/lib/python</action>
16 <action type="make_directory">$INSTALL_DIR/lib/python/bin</action>
17 <action type="shell_command">
18 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
19 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/lib/python/bin
20 </action>
21 <action type="set_environment">
22 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
23 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/lib/python/bin</environment_variable>
24 <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable>
25 </action>
26 </actions>
27 </install>
28 <readme>
29 This Galaxy Tool shed package installs verion 3.2.3 of lxml (http://lxml.de) for use with python 2.7.10.
30
31 The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF
32 </readme>
33 </package>
34 </tool_dependency>