Mercurial > repos > ulfschaefer > package_python_2_7_pyvcf_0_6_8dev

comparison tool_dependencies.xml @ 0:02eaf3d8f9a3 draft

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author ulfschaefer
date Fri, 18 Dec 2015 05:05:14 -0500
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children 7b2bbbd5bc90
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-1:000000000000 0:02eaf3d8f9a3
1 <?xml version='1.0' encoding='utf-8'?>
2 <tool_dependency>
3 <package name="python" version="2.7.10">
4 <repository changeset_revision="0339c4a9b87b" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="pyvcf" version="0.6.8dev">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">https://github.com/jamescasbon/PyVCF/archive/0eb779559e74faa14fae609c8864874ab8321c7e.tar.gz</action>
10 <action type="make_directory">$INSTALL_DIR/lib/python</action>
11 <action type="shell_command">
12 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
13 python setup.py install --install-lib $INSTALL_DIR/lib/python
14 </action>
15 <action type="set_environment">
16 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
17 <environment_variable action="set_to" name="PYTHONPATH_PYVCF">$INSTALL_DIR/lib/python</environment_variable>
18 </action>
19 </actions>
20 </install>
21 <readme>
22 This Galaxy Tool shed package installs a defined commit
23 (0eb779559e74faa14fae609c8864874ab8321c7e) of the 0.6.8dev version of PyVCF for use with python 2.7.10.
24
25 The corresponding PYTHONPATH is accessible via PYTHONPATH_PYVCF
26 </readme>
27 </package>
28 </tool_dependency>