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comparison test-data/test_output.vcf @ 0:cb29f95c7b88 draft

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author ulfschaefer
date Mon, 09 May 2016 09:27:06 -0400
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-1:000000000000 0:cb29f95c7b88
1 ##fileformat=VCFv4.1
2 ##GATKCommandLine=<ID=SelectVariants,Version=2.6-5-gba531bd,Date="Thu May 22 09:24:36 BST 2014",Epoch=1400747076888,CommandLineOptions="analysis_type=SelectVariants input_file=[] read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/phengs/galaxy/database/tmp/tmp-gatk-lMh4vi/gatk_input.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 allow_bqsr_on_reduced_bams_despite_repeated_warnings=false validation_strictness=SILENT remove_program_records=false keep_program_records=false unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=2 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=/phengs/galaxy/database/tmp/tmp-gatk-lMh4vi/input_variant.vcf) discordance=(RodBinding name= source=UNBOUND) concordance=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sample_name=[] sample_expressions=null sample_file=null exclude_sample_name=[] exclude_sample_file=[] select_expressions=[] excludeNonVariants=false excludeFiltered=false restrictAllelesTo=ALL keepOriginalAC=false mendelianViolation=false mendelianViolationQualThreshold=0.0 select_random_fraction=0.0 remove_fraction_genotypes=0.0 selectTypeToInclude=[SNP] keepIDs=null fullyDecode=false forceGenotypesDecode=false justRead=false maxIndelSize=2147483647 ALLOW_NONOVERLAPPING_COMMAND_LINE_SAMPLES=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
3 ##GATKCommandLine=<ID=UnifiedGenotyper,Version=2.6-5-gba531bd,Date="Thu May 22 09:10:24 BST 2014",Epoch=1400746224902,CommandLineOptions="analysis_type=UnifiedGenotyper input_file=[/phengs/galaxy/database/tmp/tmp-gatk-x7S0pF/gatk_input_0.bam] read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[BadCigar] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/phengs/galaxy/database/tmp/tmp-gatk-x7S0pF/gatk_input.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=NONE downsample_to_fraction=null downsample_to_coverage=null baq=OFF baqGapOpenPenalty=40.0 fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 allow_bqsr_on_reduced_bams_despite_repeated_warnings=false validation_strictness=STRICT remove_program_records=false keep_program_records=false unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false num_threads=2 num_cpu_threads_per_data_thread=6 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false version=false genotype_likelihoods_model=BOTH pcr_error_rate=1.0E-4 computeSLOD=false annotateNDA=false pair_hmm_implementation=LOGLESS_CACHING min_base_quality_score=17 max_deletion_fraction=0.05 allSitePLs=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_SITES standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=6 input_prior=[] contamination_fraction_to_filter=0.05 contamination_fraction_per_sample_file=null p_nonref_model=EXACT_INDEPENDENT exactcallslog=null dbsnp=(RodBinding name= source=UNBOUND) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null annotation=[] excludeAnnotation=[] filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
4 ##reference=file:///phengs/galaxy/database/tmp/tmp-gatk-lMh4vi/gatk_input.fasta
5 ##source=SelectVariants
6 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
7 ##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
8 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
9 ##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
10 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
11 ##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
12 ##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
13 ##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
14 ##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
15 ##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
16 ##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
17 ##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
18 ##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
19 ##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
20 ##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
21 ##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
22 ##INFO=<ID=RPA,Number=.,Type=Integer,Description="Number of times tandem repeat unit is repeated, for each allele (including reference)">
23 ##INFO=<ID=RU,Number=1,Type=String,Description="Tandem repeat unit (bases)">
24 ##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
25 ##INFO=<ID=STR,Number=0,Type=Flag,Description="Variant is a short tandem repeat">
26 ##INFO=<ID=BasesToClosestSNP,Number=1,Type=Integer,Description="Number of bases to the closest SNP in the file.">
27 ##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
28 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
29 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
30 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
31 ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
32 ##FILTER=<ID=LowQual,Description="Low quality">
33 ##FILTER=<ID=mq_score:50,Description="Filter sites by Mapping Quality (MQ) score. (MQ > 50)">
34 ##FILTER=<ID=gq_score:10,Description="Filter sites by GQ score. (GQ > 10)">
35 ##FILTER=<ID=uncall_gt:,Description="Filter uncallable genotypes (GT != ./. )">
36 ##FILTER=<ID=min_depth:100,Description="Filter sites by depth. (DP > 100)">
37 ##contig=<ID=gi|15829254|ref|NC_002695.1|,length=5498450>
38 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT H133840545_1
39 gi|15829254|ref|NC_002695.1| 6065 . C T 5384.77 PASS AC=2;AF=1.0;AN=2;DP=161;Dels=0.0;FS=0.0;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=33.45;BasesToClosestSNP=4136 GT:AD:DP:GQ:PL 1/1:0,161:161:99:5413,427,0
40 gi|15829254|ref|NC_002695.1| 10201 . C T 5819.77 PASS AC=2;AF=1.0;AN=2;DP=154;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=29.21;BasesToClosestSNP=4136 GT:AD:DP:GQ:PL 1/1:0,154:154:99:5848,451,0
41 gi|15829254|ref|NC_002695.1| 14114 . A T 6039.77 PASS AC=2;AF=1.0;AN=2;DP=166;Dels=0.0;FS=0.0;HaplotypeScore=1.6229;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.07;BasesToClosestSNP=3913 GT:AD:DP:GQ:PL 1/1:0,166:166:99:6068,469,0
42 gi|15829254|ref|NC_002695.1| 15404 . T . 17.31 LowQual;min_depth:100 AN=2;DP=33;MQ=60.0;MQ0=0 GT:DP 0/0:32
43 gi|15829254|ref|NC_002695.1| 18711 . A C 3657.77 min_depth:100 AC=2;AF=1.0;AN=2;DP=99;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.28;BasesToClosestSNP=4597 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3686,274,0
44 gi|15829254|ref|NC_002695.1| 18968 . G A 6350.77 PASS AC=2;AF=1.0;AN=2;DP=181;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.07;BasesToClosestSNP=257 GT:AD:DP:GQ:PL 1/1:0,181:181:99:6379,470,0
45 gi|15829254|ref|NC_002695.1| 47847 . C T 4038.77 PASS AC=2;AF=1.0;AN=2;DP=113;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=24.05;BasesToClosestSNP=28879 GT:AD:DP:GQ:PL 1/1:0,113:113:99:4067,313,0
46 gi|15829254|ref|NC_002695.1| 48272 . A G 3836.77 PASS AC=2;AF=1.0;AN=2;DP=106;Dels=0.0;FS=0.0;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=31.18;BasesToClosestSNP=99 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3865,298,0
47 gi|15829254|ref|NC_002695.1| 48371 . G A 4075.77 PASS AC=2;AF=1.0;AN=2;DP=106;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=25.66;BasesToClosestSNP=99 GT:AD:DP:GQ:PL 1/1:0,106:106:99:4104,310,0
48 gi|15829254|ref|NC_002695.1| 51967 . C T 3137.77 min_depth:100 AC=2;AF=1.0;AN=2;DP=97;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.35;BasesToClosestSNP=1748 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3166,259,0
49 gi|15829254|ref|NC_002695.1| 53715 . C T 3985.77 PASS AC=2;AF=1.0;AN=2;DP=110;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.04;BasesToClosestSNP=1748 GT:AD:DP:GQ:PL 1/1:0,110:110:99:4014,301,0
50 gi|15829254|ref|NC_002695.1| 57677 . T C 3587.77 PASS AC=2;AF=1.0;AN=2;DP=106;Dels=0.0;FS=0.0;HaplotypeScore=1.3302;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=33.85;BasesToClosestSNP=3962 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3616,283,0
51 gi|15829254|ref|NC_002695.1| 63127 . T G 4466.77 PASS AC=2;AF=1.0;AN=2;DP=117;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.14;BasesToClosestSNP=5450 GT:AD:DP:GQ:PL 1/1:0,117:117:99:4495,337,0
52 gi|15829254|ref|NC_002695.1| 64020 . A C 872.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=0.689;DP=248;Dels=0.0;FS=36.815;HaplotypeScore=3.9529;MLEAC=1;MLEAF=0.5;MQ=57.45;MQ0=0;MQRankSum=-2.381;QD=3.52;ReadPosRankSum=-10.71;BasesToClosestSNP=47 GT:AD:DP:GQ:PL 0/1:185,63:236:99:901,0,5685
53 gi|15829254|ref|NC_002695.1| 64067 . G C 2096.77 PASS AC=1;AF=0.5;AN=2;BaseQRankSum=-2.146;DP=209;Dels=0.0;FS=153.841;HaplotypeScore=4.9521;MLEAC=1;MLEAF=0.5;MQ=57.15;MQ0=0;MQRankSum=4.711;QD=10.03;ReadPosRankSum=-7.39;BasesToClosestSNP=47 GT:AD:DP:GQ:PL 0/1:137,72:199:99:2125,0,4003
54 gi|15829254|ref|NC_002695.1| 70555 . C T 2890.77 min_depth:100 AC=2;AF=1.0;AN=2;DP=85;Dels=0.01;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.01;BasesToClosestSNP=6488 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2919,229,0
55 gi|15829254|ref|NC_002695.1| 85412 . G A 5899.77 PASS AC=2;AF=1.0;AN=2;DP=160;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=33.27;BasesToClosestSNP=14857 GT:AD:DP:GQ:PL 1/1:0,160:160:99:5928,445,0
56 gi|15829254|ref|NC_002695.1| 88701 . T C 848.77 min_depth:100 AC=2;AF=1.0;AN=2;DP=24;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=33.62;BasesToClosestSNP=3289 GT:AD:DP:GQ:PL 1/1:0,24:24:66:877,66,0
57 gi|15829254|ref|NC_002695.1| 93390 . T G 3211.76 min_depth:100 AC=2;AF=1.0;AN=2;BaseQRankSum=1.653;DP=87;Dels=0.0;FS=0.0;HaplotypeScore=3.5473;MLEAC=2;MLEAF=1.0;MQ=59.89;MQ0=0;MQRankSum=1.653;QD=34.49;ReadPosRankSum=1.015;BasesToClosestSNP=4689 GT:AD:DP:GQ:PL 1/1:1,86:86:99:3240,247,0
58 gi|15829254|ref|NC_002695.1| 120398 . G A 4149.77 PASS AC=2;AF=1.0;AN=2;DP=109;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=28.29;BasesToClosestSNP=13502 GT:AD:DP:GQ:PL 1/1:0,109:109:99:4178,313,0
59 gi|15829254|ref|NC_002695.1| 133900 . A G 4414.77 PASS AC=2;AF=1.0;AN=2;DP=122;Dels=0.0;FS=0.0;HaplotypeScore=1.9987;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=30.13;BasesToClosestSNP=13502 GT:AD:DP:GQ:PL 1/1:0,122:122:99:4443,340,0
60 gi|15829254|ref|NC_002695.1| 142584 . T C 4353.77 PASS AC=2;AF=1.0;AN=2;DP=116;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=27.86;BasesToClosestSNP=295 GT:AD:DP:GQ:PL 1/1:0,116:116:99:4382,331,0
61 gi|15829254|ref|NC_002695.1| 142879 . C A 4885.77 PASS AC=2;AF=1.0;AN=2;DP=140;Dels=0.0;FS=0.0;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.9;BasesToClosestSNP=295 GT:AD:DP:GQ:PL 1/1:0,140:140:99:4914,376,0
62 gi|15829254|ref|NC_002695.1| 157462 . C T 4419.77 PASS AC=2;AF=1.0;AN=2;DP=121;Dels=0.0;FS=0.0;HaplotypeScore=1.6644;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=28.08;BasesToClosestSNP=3210 GT:AD:DP:GQ:PL 1/1:0,121:121:99:4448,337,0
63 gi|15829254|ref|NC_002695.1| 160672 . T C 5929.77 PASS AC=2;AF=1.0;AN=2;DP=159;Dels=0.0;FS=0.0;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=27.52;BasesToClosestSNP=3210 GT:AD:DP:GQ:PL 1/1:0,159:159:99:5958,448,0
64 gi|15829254|ref|NC_002695.1| 165369 . C T 4012.77 PASS AC=2;AF=1.0;AN=2;DP=116;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.59;BasesToClosestSNP=578 GT:AD:DP:GQ:PL 1/1:0,116:116:99:4041,304,0
65 gi|15829254|ref|NC_002695.1| 165947 . A C 2779.77 min_depth:100 AC=2;AF=1.0;AN=2;DP=85;Dels=0.0;FS=0.0;HaplotypeScore=4.3247;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.7;BasesToClosestSNP=578 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2808,229,0
66 gi|15829254|ref|NC_002695.1| 171915 . T C 3539.77 min_depth:100 AC=2;AF=1.0;AN=2;DP=96;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=24.7;BasesToClosestSNP=5968 GT:AD:DP:GQ:PL 1/1:0,96:96:99:3568,277,0
67 gi|15829254|ref|NC_002695.1| 180160 . T C 4020.77 PASS AC=2;AF=1.0;AN=2;DP=109;Dels=0.0;FS=0.0;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=30.54;BasesToClosestSNP=8245 GT:AD:DP:GQ:PL 1/1:0,109:109:99:4049,307,0
68 gi|15829254|ref|NC_002695.1| 184717 . T C 5621.77 PASS AC=2;AF=1.0;AN=2;DP=151;Dels=0.0;FS=0.0;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=25.05;BasesToClosestSNP=1393 GT:AD:DP:GQ:PL 1/1:0,151:151:99:5650,421,0
69 gi|15829254|ref|NC_002695.1| 186110 . C T 5816.77 PASS AC=2;AF=1.0;AN=2;DP=155;Dels=0.0;FS=0.0;HaplotypeScore=1.6644;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=32.83;BasesToClosestSNP=1393 GT:AD:DP:GQ:PL 1/1:0,155:155:99:5845,439,0
70 gi|15829254|ref|NC_002695.1| 205552 . C T 3913.77 PASS AC=2;AF=1.0;AN=2;DP=112;Dels=0.0;FS=0.0;HaplotypeScore=2.6603;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=34.94;BasesToClosestSNP=11905 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3942,304,0
71 gi|15829254|ref|NC_002695.1| 217457 . A T 3215.74 min_depth:100 AC=2;AF=1.0;AN=2;DP=88;Dels=0.0;FS=0.0;HaplotypeScore=1.6229;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=30.68;BasesToClosestSNP=11905 GT:AD:DP:GQ:PL 1/1:0,88:88:99:3244,247,0
72 gi|15829254|ref|NC_002695.1| 218091 . T C 3066.77 min_depth:100 AC=2;AF=1.0;AN=2;DP=81;Dels=0.0;FS=0.0;HaplotypeScore=0.0;MLEAC=2;MLEAF=1.0;MQ=60.0;MQ0=0;QD=28.01;BasesToClosestSNP=634 GT:AD:DP:GQ:PL 1/1:0,81:81:99:3095,232,0
73 gi|15829254|ref|NC_002695.1| 226900 . A . 284.23 mq_score:50 AN=2;DP=106;MQ=49.79;MQ0=17 GT:DP 0/0:106
74 gi|15829254|ref|NC_002695.1| 226901 . A . 284.23 mq_score:50 AN=2;DP=106;MQ=49.79;MQ0=17 GT:DP 0/0:106
75 gi|15829254|ref|NC_002695.1| 226902 . G . 278.23 mq_score:50 AN=2;DP=105;MQ=49.34;MQ0=18 GT:DP 0/0:105
76 gi|15829254|ref|NC_002695.1| 226903 . A . 275.23 mq_score:50 AN=2;DP=104;MQ=49.22;MQ0=18 GT:DP 0/0:104
77 gi|15829254|ref|NC_002695.1| 226904 . G . 275.23 mq_score:50 AN=2;DP=106;MQ=48.91;MQ0=19 GT:DP 0/0:106
78 gi|15829254|ref|NC_002695.1| 226905 . G . 275.23 mq_score:50 AN=2;DP=105;MQ=48.79;MQ0=19 GT:DP 0/0:105
79 gi|15829254|ref|NC_002695.1| 226906 . A . 284.23 mq_score:50 AN=2;DP=107;MQ=48.64;MQ0=19 GT:DP 0/0:107
80 gi|15829254|ref|NC_002695.1| 226907 . A . 278.23 mq_score:50 AN=2;DP=107;MQ=48.64;MQ0=19 GT:DP 0/0:107
81 gi|15829254|ref|NC_002695.1| 226908 . A . 284.23 mq_score:50 AN=2;DP=107;MQ=48.64;MQ0=19 GT:DP 0/0:107
82 gi|15829254|ref|NC_002695.1| 226909 . G . 281.23 mq_score:50 AN=2;DP=109;MQ=48.19;MQ0=21 GT:DP 0/0:109
83 gi|15829254|ref|NC_002695.1| 226910 . C . 275.23 mq_score:50 AN=2;DP=111;MQ=47.76;MQ0=23 GT:DP 0/0:111
84 gi|15829254|ref|NC_002695.1| 226911 . G . 281.23 mq_score:50 AN=2;DP=112;MQ=47.69;MQ0=23 GT:DP 0/0:112
85 gi|15829254|ref|NC_002695.1| 226912 . T . 275.23 mq_score:50 AN=2;DP=109;MQ=47.12;MQ0=23 GT:DP 0/0:109
86 gi|15829254|ref|NC_002695.1| 226913 . A . 269.23 mq_score:50 AN=2;DP=107;MQ=46.84;MQ0=23 GT:DP 0/0:104
87 gi|15829254|ref|NC_002695.1| 226914 . A . 260.23 mq_score:50 AN=2;DP=115;MQ=44.48;MQ0=33 GT:DP 0/0:112
88 gi|15829254|ref|NC_002695.1| 226915 . T . 269.23 mq_score:50 AN=2;DP=115;MQ=44.48;MQ0=33 GT:DP 0/0:115
89 gi|15829254|ref|NC_002695.1| 226916 . A . 266.23 mq_score:50 AN=2;DP=118;MQ=43.91;MQ0=36 GT:DP 0/0:118
90 gi|15829254|ref|NC_002695.1| 226917 . T . 272.23 mq_score:50 AN=2;DP=120;MQ=43.85;MQ0=36 GT:DP 0/0:120
91 gi|15829254|ref|NC_002695.1| 226918 . A . 215.23 mq_score:50;min_depth:100 AN=2;DP=102;MQ=40.35;MQ0=36 GT:DP 0/0:99
92 gi|15829254|ref|NC_002695.1| 226919 . C . 227.23 mq_score:50 AN=2;DP=103;MQ=40.35;MQ0=36 GT:DP 0/0:103
93 gi|15829254|ref|NC_002695.1| 226920 . G . 218.23 mq_score:50 AN=2;DP=101;MQ=39.86;MQ0=36 GT:DP 0/0:101
94 gi|15829254|ref|NC_002695.1| 226921 . C . 218.23 mq_score:50 AN=2;DP=101;MQ=39.86;MQ0=36 GT:DP 0/0:101
95 gi|15829254|ref|NC_002695.1| 226922 . C . 209.23 mq_score:50 AN=2;DP=101;MQ=39.61;MQ0=36 GT:DP 0/0:101
96 gi|15829254|ref|NC_002695.1| 226923 . A . 199.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=38.82;MQ0=36 GT:DP 0/0:98
97 gi|15829254|ref|NC_002695.1| 226924 . C . 206.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=38.34;MQ0=37 GT:DP 0/0:98
98 gi|15829254|ref|NC_002695.1| 226925 . C . 203.23 mq_score:50;min_depth:100 AN=2;DP=96;MQ=37.76;MQ0=37 GT:DP 0/0:96
99 gi|15829254|ref|NC_002695.1| 226926 . T . 197.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=37.57;MQ0=38 GT:DP 0/0:97
100 gi|15829254|ref|NC_002695.1| 226927 . C . 206.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=37.59;MQ0=38 GT:DP 0/0:98
101 gi|15829254|ref|NC_002695.1| 226928 . G . 206.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=37.59;MQ0=38 GT:DP 0/0:98
102 gi|15829254|ref|NC_002695.1| 226929 . C . 203.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=37.13;MQ0=39 GT:DP 0/0:98
103 gi|15829254|ref|NC_002695.1| 226930 . G . 200.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=36.86;MQ0=39 GT:DP 0/0:97
104 gi|15829254|ref|NC_002695.1| 226931 . A . 197.23 mq_score:50;min_depth:100 AN=2;DP=96;MQ=36.55;MQ0=39 GT:DP 0/0:96
105 gi|15829254|ref|NC_002695.1| 226932 . C . 197.23 mq_score:50;min_depth:100 AN=2;DP=96;MQ=36.55;MQ0=39 GT:DP 0/0:96
106 gi|15829254|ref|NC_002695.1| 226933 . A . 184.23 mq_score:50;min_depth:100 AN=2;DP=91;MQ=34.96;MQ0=39 GT:DP 0/0:91
107 gi|15829254|ref|NC_002695.1| 226934 . G . 184.23 mq_score:50;min_depth:100 AN=2;DP=91;MQ=34.96;MQ0=39 GT:DP 0/0:91
108 gi|15829254|ref|NC_002695.1| 226935 . T . 178.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=34.26;MQ0=39 GT:DP 0/0:89
109 gi|15829254|ref|NC_002695.1| 226936 . G . 178.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=34.26;MQ0=39 GT:DP 0/0:89
110 gi|15829254|ref|NC_002695.1| 226937 . A . 172.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=34.26;MQ0=39 GT:DP 0/0:86
111 gi|15829254|ref|NC_002695.1| 226938 . G . 178.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=33.96;MQ0=41 GT:DP 0/0:92
112 gi|15829254|ref|NC_002695.1| 226939 . C . 181.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=33.96;MQ0=41 GT:DP 0/0:92
113 gi|15829254|ref|NC_002695.1| 226940 . T . 187.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=34.28;MQ0=41 GT:DP 0/0:94
114 gi|15829254|ref|NC_002695.1| 226941 . G . 187.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=34.01;MQ0=41 GT:DP 0/0:91
115 gi|15829254|ref|NC_002695.1| 226942 . A . 188.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=34.01;MQ0=41 GT:DP 0/0:94
116 gi|15829254|ref|NC_002695.1| 226943 . A . 181.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=33.66;MQ0=41 GT:DP 0/0:93
117 gi|15829254|ref|NC_002695.1| 226944 . A . 181.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=33.66;MQ0=41 GT:DP 0/0:93
118 gi|15829254|ref|NC_002695.1| 226945 . G . 175.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=32.54;MQ0=41 GT:DP 0/0:90
119 gi|15829254|ref|NC_002695.1| 226946 . C . 166.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=32.54;MQ0=41 GT:DP 0/0:90
120 gi|15829254|ref|NC_002695.1| 226947 . C . 175.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=32.54;MQ0=41 GT:DP 0/0:90
121 gi|15829254|ref|NC_002695.1| 226948 . G . 175.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=32.54;MQ0=41 GT:DP 0/0:90
122 gi|15829254|ref|NC_002695.1| 226949 . C . 166.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=31.11;MQ0=42 GT:DP 0/0:88
123 gi|15829254|ref|NC_002695.1| 226950 . G . 166.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=31.11;MQ0=42 GT:DP 0/0:88
124 gi|15829254|ref|NC_002695.1| 226951 . T . 178.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=31.65;MQ0=42 GT:DP 0/0:93
125 gi|15829254|ref|NC_002695.1| 226952 . C . 184.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=31.75;MQ0=42 GT:DP 0/0:94
126 gi|15829254|ref|NC_002695.1| 226953 . G . 203.23 mq_score:50 AN=2;DP=101;MQ=32.39;MQ0=42 GT:DP 0/0:101
127 gi|15829254|ref|NC_002695.1| 226954 . C . 203.23 mq_score:50 AN=2;DP=102;MQ=31.72;MQ0=44 GT:DP 0/0:102
128 gi|15829254|ref|NC_002695.1| 226955 . A . 200.23 mq_score:50 AN=2;DP=102;MQ=31.72;MQ0=44 GT:DP 0/0:102
129 gi|15829254|ref|NC_002695.1| 226956 . A . 206.23 mq_score:50 AN=2;DP=104;MQ=31.9;MQ0=44 GT:DP 0/0:104
130 gi|15829254|ref|NC_002695.1| 226957 . C . 206.23 mq_score:50 AN=2;DP=104;MQ=31.9;MQ0=44 GT:DP 0/0:104
131 gi|15829254|ref|NC_002695.1| 226958 . T . 209.23 mq_score:50 AN=2;DP=102;MQ=32.21;MQ0=42 GT:DP 0/0:102
132 gi|15829254|ref|NC_002695.1| 226959 . G . 215.23 mq_score:50 AN=2;DP=106;MQ=32.07;MQ0=44 GT:DP 0/0:106
133 gi|15829254|ref|NC_002695.1| 226960 . C . 206.23 mq_score:50 AN=2;DP=106;MQ=31.06;MQ0=46 GT:DP 0/0:106
134 gi|15829254|ref|NC_002695.1| 226961 . T . 197.23 mq_score:50 AN=2;DP=104;MQ=30.31;MQ0=46 GT:DP 0/0:104
135 gi|15829254|ref|NC_002695.1| 226962 . C . 203.23 mq_score:50 AN=2;DP=105;MQ=30.17;MQ0=47 GT:DP 0/0:105
136 gi|15829254|ref|NC_002695.1| 226963 . T . 191.23 mq_score:50 AN=2;DP=101;MQ=29.49;MQ0=47 GT:DP 0/0:101
137 gi|15829254|ref|NC_002695.1| 226964 . T . 191.23 mq_score:50 AN=2;DP=101;MQ=29.49;MQ0=47 GT:DP 0/0:101
138 gi|15829254|ref|NC_002695.1| 226965 . T . 191.23 mq_score:50 AN=2;DP=101;MQ=29.49;MQ0=47 GT:DP 0/0:101
139 gi|15829254|ref|NC_002695.1| 226966 . A . 191.23 mq_score:50 AN=2;DP=101;MQ=29.63;MQ0=47 GT:DP 0/0:101
140 gi|15829254|ref|NC_002695.1| 226967 . A . 203.23 mq_score:50 AN=2;DP=105;MQ=30.09;MQ0=47 GT:DP 0/0:105
141 gi|15829254|ref|NC_002695.1| 226968 . C . 206.23 mq_score:50 AN=2;DP=108;MQ=29.92;MQ0=49 GT:DP 0/0:108
142 gi|15829254|ref|NC_002695.1| 226969 . A . 194.23 mq_score:50 AN=2;DP=104;MQ=29.2;MQ0=49 GT:DP 0/0:104
143 gi|15829254|ref|NC_002695.1| 226970 . A . 194.23 mq_score:50 AN=2;DP=106;MQ=28.92;MQ0=51 GT:DP 0/0:106
144 gi|15829254|ref|NC_002695.1| 226971 . T . 188.23 mq_score:50 AN=2;DP=105;MQ=28.42;MQ0=52 GT:DP 0/0:105
145 gi|15829254|ref|NC_002695.1| 226972 . T . 188.23 mq_score:50 AN=2;DP=108;MQ=28.02;MQ0=55 GT:DP 0/0:108
146 gi|15829254|ref|NC_002695.1| 226973 . T . 187.23 mq_score:50 AN=2;DP=108;MQ=28.02;MQ0=55 GT:DP 0/0:108
147 gi|15829254|ref|NC_002695.1| 226974 . A . 188.23 mq_score:50 AN=2;DP=108;MQ=28.02;MQ0=55 GT:DP 0/0:108
148 gi|15829254|ref|NC_002695.1| 226975 . T . 185.23 mq_score:50 AN=2;DP=108;MQ=28.02;MQ0=55 GT:DP 0/0:108
149 gi|15829254|ref|NC_002695.1| 226976 . C . 188.23 mq_score:50 AN=2;DP=108;MQ=28.02;MQ0=55 GT:DP 0/0:108
150 gi|15829254|ref|NC_002695.1| 226977 . A . 184.23 mq_score:50 AN=2;DP=107;MQ=27.88;MQ0=55 GT:DP 0/0:107
151 gi|15829254|ref|NC_002695.1| 226978 . G . 184.23 mq_score:50 AN=2;DP=108;MQ=27.76;MQ0=56 GT:DP 0/0:108
152 gi|15829254|ref|NC_002695.1| 226979 . A . 181.23 mq_score:50 AN=2;DP=107;MQ=27.62;MQ0=56 GT:DP 0/0:107
153 gi|15829254|ref|NC_002695.1| 226980 . C . 181.23 mq_score:50 AN=2;DP=109;MQ=27.36;MQ0=58 GT:DP 0/0:109
154 gi|15829254|ref|NC_002695.1| 226981 . A . 172.23 mq_score:50 AN=2;DP=106;MQ=26.92;MQ0=58 GT:DP 0/0:106
155 gi|15829254|ref|NC_002695.1| 226982 . A . 178.23 mq_score:50 AN=2;DP=108;MQ=27.22;MQ0=58 GT:DP 0/0:108
156 gi|15829254|ref|NC_002695.1| 226983 . T . 178.23 mq_score:50 AN=2;DP=109;MQ=27.09;MQ0=59 GT:DP 0/0:109
157 gi|15829254|ref|NC_002695.1| 226984 . C . 178.23 mq_score:50 AN=2;DP=113;MQ=26.61;MQ0=63 GT:DP 0/0:113
158 gi|15829254|ref|NC_002695.1| 226985 . T . 175.23 mq_score:50 AN=2;DP=110;MQ=26.7;MQ0=61 GT:DP 0/0:110
159 gi|15829254|ref|NC_002695.1| 226986 . G . 175.23 mq_score:50 AN=2;DP=111;MQ=26.58;MQ0=62 GT:DP 0/0:111
160 gi|15829254|ref|NC_002695.1| 226987 . T . 172.23 mq_score:50 AN=2;DP=108;MQ=26.67;MQ0=60 GT:DP 0/0:108
161 gi|15829254|ref|NC_002695.1| 226988 . G . 172.23 mq_score:50 AN=2;DP=108;MQ=26.67;MQ0=60 GT:DP 0/0:108
162 gi|15829254|ref|NC_002695.1| 226989 . T . 169.23 mq_score:50 AN=2;DP=105;MQ=26.76;MQ0=58 GT:DP 0/0:105
163 gi|15829254|ref|NC_002695.1| 226990 . G . 166.23 mq_score:50 AN=2;DP=105;MQ=26.76;MQ0=58 GT:DP 0/0:105
164 gi|15829254|ref|NC_002695.1| 226991 . G . 166.23 mq_score:50 AN=2;DP=105;MQ=26.48;MQ0=59 GT:DP 0/0:105
165 gi|15829254|ref|NC_002695.1| 226992 . G . 157.23 mq_score:50 AN=2;DP=104;MQ=26.31;MQ0=59 GT:DP 0/0:104
166 gi|15829254|ref|NC_002695.1| 226993 . C . 160.23 mq_score:50 AN=2;DP=105;MQ=26.19;MQ0=60 GT:DP 0/0:105
167 gi|15829254|ref|NC_002695.1| 226994 . A . 151.23 mq_score:50 AN=2;DP=104;MQ=26.31;MQ0=59 GT:DP 0/0:101
168 gi|15829254|ref|NC_002695.1| 226995 . C . 157.23 mq_score:50 AN=2;DP=106;MQ=25.48;MQ0=63 GT:DP 0/0:106
169 gi|15829254|ref|NC_002695.1| 226996 . T . 154.23 mq_score:50 AN=2;DP=104;MQ=25.42;MQ0=62 GT:DP 0/0:104
170 gi|15829254|ref|NC_002695.1| 226997 . C . 151.23 mq_score:50 AN=2;DP=106;MQ=25.18;MQ0=64 GT:DP 0/0:106
171 gi|15829254|ref|NC_002695.1| 226998 . G . 151.23 mq_score:50 AN=2;DP=105;MQ=25.3;MQ0=63 GT:DP 0/0:105
172 gi|15829254|ref|NC_002695.1| 226999 . A . 154.23 mq_score:50 AN=2;DP=104;MQ=25.42;MQ0=62 GT:DP 0/0:104
173 gi|15829254|ref|NC_002695.1| 227000 . A . 151.23 mq_score:50;min_depth:100 AN=2;DP=103;MQ=25.24;MQ0=62 GT:DP 0/0:99
174 gi|15829254|ref|NC_002695.1| 227001 . G . 151.23 mq_score:50 AN=2;DP=103;MQ=25.24;MQ0=62 GT:DP 0/0:103
175 gi|15829254|ref|NC_002695.1| 227002 . A . 151.23 mq_score:50 AN=2;DP=102;MQ=25.36;MQ0=61 GT:DP 0/0:102
176 gi|15829254|ref|NC_002695.1| 227003 . T . 148.23 mq_score:50 AN=2;DP=102;MQ=25.36;MQ0=61 GT:DP 0/0:102
177 gi|15829254|ref|NC_002695.1| 227004 . A . 142.23 mq_score:50 AN=2;DP=100;MQ=25.3;MQ0=60 GT:DP 0/0:100
178 gi|15829254|ref|NC_002695.1| 227005 . C . 148.23 mq_score:50 AN=2;DP=100;MQ=25.3;MQ0=60 GT:DP 0/0:100
179 gi|15829254|ref|NC_002695.1| 227006 . G . 148.23 mq_score:50 AN=2;DP=100;MQ=25.3;MQ0=60 GT:DP 0/0:100
180 gi|15829254|ref|NC_002695.1| 227007 . G . 148.23 mq_score:50 AN=2;DP=100;MQ=25.3;MQ0=60 GT:DP 0/0:100
181 gi|15829254|ref|NC_002695.1| 227008 . A . 151.23 mq_score:50 AN=2;DP=101;MQ=25.49;MQ0=60 GT:DP 0/0:101
182 gi|15829254|ref|NC_002695.1| 227009 . T . 151.23 mq_score:50 AN=2;DP=102;MQ=25.36;MQ0=61 GT:DP 0/0:102
183 gi|15829254|ref|NC_002695.1| 227010 . T . 151.23 mq_score:50 AN=2;DP=102;MQ=25.36;MQ0=61 GT:DP 0/0:102
184 gi|15829254|ref|NC_002695.1| 227011 . C . 148.23 mq_score:50 AN=2;DP=103;MQ=24.93;MQ0=63 GT:DP 0/0:103
185 gi|15829254|ref|NC_002695.1| 227012 . T . 145.23 mq_score:50 AN=2;DP=102;MQ=24.73;MQ0=63 GT:DP 0/0:102
186 gi|15829254|ref|NC_002695.1| 227013 . T . 145.23 mq_score:50 AN=2;DP=102;MQ=24.73;MQ0=63 GT:DP 0/0:102
187 gi|15829254|ref|NC_002695.1| 227014 . A . 145.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=25.76;MQ0=55 GT:DP 0/0:94
188 gi|15829254|ref|NC_002695.1| 227015 . A . 145.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=25.9;MQ0=54 GT:DP 0/0:93
189 gi|15829254|ref|NC_002695.1| 227016 . C . 145.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=26.38;MQ0=52 GT:DP 0/0:92
190 gi|15829254|ref|NC_002695.1| 227017 . G . 142.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=25.99;MQ0=52 GT:DP 0/0:90
191 gi|15829254|ref|NC_002695.1| 227018 . T . 142.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=25.99;MQ0=52 GT:DP 0/0:90
192 gi|15829254|ref|NC_002695.1| 227019 . C . 142.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=25.99;MQ0=52 GT:DP 0/0:90
193 gi|15829254|ref|NC_002695.1| 227020 . G . 145.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=26.04;MQ0=53 GT:DP 0/0:92
194 gi|15829254|ref|NC_002695.1| 227021 . C . 148.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=26.38;MQ0=52 GT:DP 0/0:92
195 gi|15829254|ref|NC_002695.1| 227022 . A . 142.23 mq_score:50;min_depth:100 AN=2;DP=91;MQ=26.19;MQ0=52 GT:DP 0/0:91
196 gi|15829254|ref|NC_002695.1| 227023 . A . 145.23 mq_score:50;min_depth:100 AN=2;DP=91;MQ=26.19;MQ0=52 GT:DP 0/0:91
197 gi|15829254|ref|NC_002695.1| 227024 . G . 145.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=26.33;MQ0=51 GT:DP 0/0:90
198 gi|15829254|ref|NC_002695.1| 227025 . A . 145.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=26.33;MQ0=51 GT:DP 0/0:90
199 gi|15829254|ref|NC_002695.1| 227026 . C . 145.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=26.33;MQ0=51 GT:DP 0/0:90
200 gi|15829254|ref|NC_002695.1| 227027 . G . 142.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=25.99;MQ0=52 GT:DP 0/0:90
201 gi|15829254|ref|NC_002695.1| 227028 . A . 142.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=25.99;MQ0=52 GT:DP 0/0:90
202 gi|15829254|ref|NC_002695.1| 227029 . A . 142.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=26.14;MQ0=51 GT:DP 0/0:89
203 gi|15829254|ref|NC_002695.1| 227030 . A . 142.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=25.99;MQ0=52 GT:DP 0/0:90
204 gi|15829254|ref|NC_002695.1| 227031 . A . 145.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=25.76;MQ0=55 GT:DP 0/0:94
205 gi|15829254|ref|NC_002695.1| 227032 . A . 145.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=25.36;MQ0=58 GT:DP 0/0:97
206 gi|15829254|ref|NC_002695.1| 227033 . T . 145.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=25.23;MQ0=59 GT:DP 0/0:98
207 gi|15829254|ref|NC_002695.1| 227034 . G . 145.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=25.23;MQ0=59 GT:DP 0/0:98
208 gi|15829254|ref|NC_002695.1| 227035 . A . 145.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=25.23;MQ0=59 GT:DP 0/0:98
209 gi|15829254|ref|NC_002695.1| 227036 . A . 148.23 mq_score:50;min_depth:100 AN=2;DP=99;MQ=25.43;MQ0=59 GT:DP 0/0:99
210 gi|15829254|ref|NC_002695.1| 227037 . T . 148.23 mq_score:50 AN=2;DP=100;MQ=25.61;MQ0=59 GT:DP 0/0:100
211 gi|15829254|ref|NC_002695.1| 227038 . A . 142.23 mq_score:50;min_depth:100 AN=2;DP=99;MQ=25.43;MQ0=59 GT:DP 0/0:99
212 gi|15829254|ref|NC_002695.1| 227039 . C . 148.23 mq_score:50 AN=2;DP=101;MQ=25.49;MQ0=60 GT:DP 0/0:101
213 gi|15829254|ref|NC_002695.1| 227040 . C . 142.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=24.91;MQ0=60 GT:DP 0/0:98
214 gi|15829254|ref|NC_002695.1| 227041 . A . 139.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=24.7;MQ0=60 GT:DP 0/0:97
215 gi|15829254|ref|NC_002695.1| 227042 . A . 139.23 mq_score:50 AN=2;DP=100;MQ=24.33;MQ0=63 GT:DP 0/0:100
216 gi|15829254|ref|NC_002695.1| 227043 . G . 139.23 mq_score:50 AN=2;DP=105;MQ=23.74;MQ0=68 GT:DP 0/0:105
217 gi|15829254|ref|NC_002695.1| 227044 . T . 139.23 mq_score:50 AN=2;DP=108;MQ=23.41;MQ0=71 GT:DP 0/0:108
218 gi|15829254|ref|NC_002695.1| 227045 . C . 139.23 mq_score:50 AN=2;DP=108;MQ=23.41;MQ0=71 GT:DP 0/0:108
219 gi|15829254|ref|NC_002695.1| 227046 . T . 139.23 mq_score:50 AN=2;DP=108;MQ=23.41;MQ0=71 GT:DP 0/0:108
220 gi|15829254|ref|NC_002695.1| 227047 . C . 139.23 mq_score:50 AN=2;DP=108;MQ=23.41;MQ0=71 GT:DP 0/0:108
221 gi|15829254|ref|NC_002695.1| 227048 . A . 139.23 mq_score:50 AN=2;DP=108;MQ=23.41;MQ0=71 GT:DP 0/0:108
222 gi|15829254|ref|NC_002695.1| 227049 . A . 136.23 mq_score:50 AN=2;DP=107;MQ=23.2;MQ0=71 GT:DP 0/0:107
223 gi|15829254|ref|NC_002695.1| 227050 . G . 136.23 mq_score:50 AN=2;DP=107;MQ=23.2;MQ0=71 GT:DP 0/0:107
224 gi|15829254|ref|NC_002695.1| 227051 . A . 115.23 mq_score:50 AN=2;DP=100;MQ=21.54;MQ0=71 GT:DP 0/0:100
225 gi|15829254|ref|NC_002695.1| 227052 . G . 115.23 mq_score:50 AN=2;DP=100;MQ=21.54;MQ0=71 GT:DP 0/0:100
226 gi|15829254|ref|NC_002695.1| 227053 . T . 100.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=20.43;MQ0=68 GT:DP 0/0:92
227 gi|15829254|ref|NC_002695.1| 227054 . G . 103.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=20.85;MQ0=67 GT:DP 0/0:92
228 gi|15829254|ref|NC_002695.1| 227055 . A . 106.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=20.71;MQ0=71 GT:DP 0/0:97
229 gi|15829254|ref|NC_002695.1| 227056 . A . 106.23 mq_score:50 AN=2;DP=102;MQ=19.96;MQ0=76 GT:DP 0/0:102
230 gi|15829254|ref|NC_002695.1| 227057 . C . 103.23 mq_score:50 AN=2;DP=104;MQ=19.76;MQ0=78 GT:DP 0/0:104
231 gi|15829254|ref|NC_002695.1| 227058 . A . 100.23 mq_score:50 AN=2;DP=106;MQ=19.19;MQ0=81 GT:DP 0/0:106
232 gi|15829254|ref|NC_002695.1| 227059 . C . 100.23 mq_score:50 AN=2;DP=105;MQ=18.88;MQ0=81 GT:DP 0/0:105
233 gi|15829254|ref|NC_002695.1| 227060 . G . 100.23 mq_score:50 AN=2;DP=103;MQ=19.06;MQ0=79 GT:DP 0/0:103
234 gi|15829254|ref|NC_002695.1| 227061 . T . 97.23 mq_score:50 AN=2;DP=103;MQ=19.06;MQ0=79 GT:DP 0/0:103
235 gi|15829254|ref|NC_002695.1| 227062 . A . 100.23 mq_score:50 AN=2;DP=102;MQ=19.15;MQ0=78 GT:DP 0/0:102
236 gi|15829254|ref|NC_002695.1| 227063 . A . 97.23 mq_score:50 AN=2;DP=106;MQ=18.79;MQ0=82 GT:DP 0/0:106
237 gi|15829254|ref|NC_002695.1| 227064 . T . 97.23 mq_score:50 AN=2;DP=106;MQ=18.79;MQ0=82 GT:DP 0/0:106
238 gi|15829254|ref|NC_002695.1| 227065 . T . 100.23 mq_score:50 AN=2;DP=108;MQ=18.62;MQ0=84 GT:DP 0/0:108
239 gi|15829254|ref|NC_002695.1| 227066 . C . 97.23 mq_score:50 AN=2;DP=106;MQ=18.38;MQ0=83 GT:DP 0/0:106
240 gi|15829254|ref|NC_002695.1| 227067 . A . 79.23 mq_score:50;min_depth:100 AN=2;DP=99;MQ=16.76;MQ0=81 GT:DP 0/0:96
241 gi|15829254|ref|NC_002695.1| 227068 . T . 82.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=16.85;MQ0=80 GT:DP 0/0:98
242 gi|15829254|ref|NC_002695.1| 227069 . T . 82.23 mq_score:50;min_depth:100 AN=2;DP=99;MQ=16.76;MQ0=81 GT:DP 0/0:99
243 gi|15829254|ref|NC_002695.1| 227070 . A . 82.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=16.94;MQ0=79 GT:DP 0/0:97
244 gi|15829254|ref|NC_002695.1| 227071 . C . 82.23 mq_score:50;min_depth:100 AN=2;DP=95;MQ=17.11;MQ0=77 GT:DP 0/0:95
245 gi|15829254|ref|NC_002695.1| 227072 . G . 82.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=17.3;MQ0=75 GT:DP 0/0:93
246 gi|15829254|ref|NC_002695.1| 227073 . A . 82.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=17.3;MQ0=75 GT:DP 0/0:93
247 gi|15829254|ref|NC_002695.1| 227074 . A . 82.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=17.3;MQ0=75 GT:DP 0/0:93
248 gi|15829254|ref|NC_002695.1| 227075 . G . 82.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=16.94;MQ0=79 GT:DP 0/0:97
249 gi|15829254|ref|NC_002695.1| 227076 . T . 82.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=16.94;MQ0=79 GT:DP 0/0:97
250 gi|15829254|ref|NC_002695.1| 227077 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=17.33;MQ0=79 GT:DP 0/0:98
251 gi|15829254|ref|NC_002695.1| 227078 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=17.42;MQ0=78 GT:DP 0/0:97
252 gi|15829254|ref|NC_002695.1| 227079 . A . 85.23 mq_score:50 AN=2;DP=102;MQ=16.98;MQ0=83 GT:DP 0/0:102
253 gi|15829254|ref|NC_002695.1| 227080 . A . 85.23 mq_score:50 AN=2;DP=100;MQ=17.15;MQ0=81 GT:DP 0/0:100
254 gi|15829254|ref|NC_002695.1| 227081 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=99;MQ=17.24;MQ0=80 GT:DP 0/0:99
255 gi|15829254|ref|NC_002695.1| 227082 . T . 76.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=16.44;MQ0=80 GT:DP 0/0:97
256 gi|15829254|ref|NC_002695.1| 227083 . C . 79.23 mq_score:50;min_depth:100 AN=2;DP=95;MQ=16.61;MQ0=78 GT:DP 0/0:95
257 gi|15829254|ref|NC_002695.1| 227084 . T . 79.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=16.79;MQ0=76 GT:DP 0/0:93
258 gi|15829254|ref|NC_002695.1| 227085 . T . 79.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=16.79;MQ0=76 GT:DP 0/0:93
259 gi|15829254|ref|NC_002695.1| 227086 . T . 79.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=16.7;MQ0=77 GT:DP 0/0:94
260 gi|15829254|ref|NC_002695.1| 227087 . G . 76.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=16.7;MQ0=77 GT:DP 0/0:94
261 gi|15829254|ref|NC_002695.1| 227088 . A . 79.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=16.7;MQ0=77 GT:DP 0/0:94
262 gi|15829254|ref|NC_002695.1| 227089 . G . 76.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=16.79;MQ0=76 GT:DP 0/0:92
263 gi|15829254|ref|NC_002695.1| 227090 . C . 79.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=16.79;MQ0=76 GT:DP 0/0:93
264 gi|15829254|ref|NC_002695.1| 227091 . A . 76.23 mq_score:50;min_depth:100 AN=2;DP=91;MQ=16.45;MQ0=75 GT:DP 0/0:91
265 gi|15829254|ref|NC_002695.1| 227092 . T . 76.23 mq_score:50;min_depth:100 AN=2;DP=91;MQ=16.45;MQ0=75 GT:DP 0/0:91
266 gi|15829254|ref|NC_002695.1| 227093 . C . 76.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=16.63;MQ0=73 GT:DP 0/0:89
267 gi|15829254|ref|NC_002695.1| 227094 . A . 76.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=16.73;MQ0=72 GT:DP 0/0:88
268 gi|15829254|ref|NC_002695.1| 227095 . A . 73.23 mq_score:50;min_depth:100 AN=2;DP=85;MQ=17.02;MQ0=69 GT:DP 0/0:85
269 gi|15829254|ref|NC_002695.1| 227096 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=85;MQ=17.02;MQ0=69 GT:DP 0/0:85
270 gi|15829254|ref|NC_002695.1| 227097 . C . 76.23 mq_score:50;min_depth:100 AN=2;DP=86;MQ=16.92;MQ0=70 GT:DP 0/0:86
271 gi|15829254|ref|NC_002695.1| 227098 . T . 76.23 mq_score:50;min_depth:100 AN=2;DP=86;MQ=16.92;MQ0=70 GT:DP 0/0:86
272 gi|15829254|ref|NC_002695.1| 227099 . T . 73.23 mq_score:50;min_depth:100 AN=2;DP=85;MQ=17.02;MQ0=69 GT:DP 0/0:85
273 gi|15829254|ref|NC_002695.1| 227100 . T . 73.23 mq_score:50;min_depth:100 AN=2;DP=85;MQ=17.02;MQ0=69 GT:DP 0/0:85
274 gi|15829254|ref|NC_002695.1| 227101 . T . 76.23 mq_score:50;min_depth:100 AN=2;DP=85;MQ=17.02;MQ0=69 GT:DP 0/0:85
275 gi|15829254|ref|NC_002695.1| 227102 . A . 79.23 mq_score:50;min_depth:100 AN=2;DP=86;MQ=17.46;MQ0=69 GT:DP 0/0:86
276 gi|15829254|ref|NC_002695.1| 227103 . A . 76.23 mq_score:50;min_depth:100 AN=2;DP=85;MQ=17.57;MQ0=68 GT:DP 0/0:85
277 gi|15829254|ref|NC_002695.1| 227104 . A . 82.23 mq_score:50;min_depth:100 AN=2;DP=86;MQ=17.99;MQ0=68 GT:DP 0/0:86
278 gi|15829254|ref|NC_002695.1| 227105 . T . 79.23 mq_score:50;min_depth:100 AN=2;DP=86;MQ=17.99;MQ0=68 GT:DP 0/0:86
279 gi|15829254|ref|NC_002695.1| 227106 . T . 73.23 mq_score:50;min_depth:100 AN=2;DP=84;MQ=17.12;MQ0=68 GT:DP 0/0:84
280 gi|15829254|ref|NC_002695.1| 227107 . G . 73.23 mq_score:50;min_depth:100 AN=2;DP=84;MQ=17.12;MQ0=68 GT:DP 0/0:84
281 gi|15829254|ref|NC_002695.1| 227108 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=83;MQ=16.66;MQ0=68 GT:DP 0/0:83
282 gi|15829254|ref|NC_002695.1| 227109 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=80;MQ=16.97;MQ0=65 GT:DP 0/0:80
283 gi|15829254|ref|NC_002695.1| 227110 . G . 73.23 mq_score:50;min_depth:100 AN=2;DP=85;MQ=16.46;MQ0=70 GT:DP 0/0:85
284 gi|15829254|ref|NC_002695.1| 227111 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=83;MQ=16.66;MQ0=68 GT:DP 0/0:83
285 gi|15829254|ref|NC_002695.1| 227112 . G . 70.23 mq_score:50;min_depth:100 AN=2;DP=86;MQ=16.36;MQ0=71 GT:DP 0/0:86
286 gi|15829254|ref|NC_002695.1| 227113 . T . 70.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=16.18;MQ0=73 GT:DP 0/0:88
287 gi|15829254|ref|NC_002695.1| 227114 . T . 73.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=16.18;MQ0=73 GT:DP 0/0:88
288 gi|15829254|ref|NC_002695.1| 227115 . T . 73.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=15.99;MQ0=75 GT:DP 0/0:90
289 gi|15829254|ref|NC_002695.1| 227116 . G . 70.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=15.52;MQ0=75 GT:DP 0/0:89
290 gi|15829254|ref|NC_002695.1| 227117 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=15.52;MQ0=75 GT:DP 0/0:89
291 gi|15829254|ref|NC_002695.1| 227118 . T . 70.23 mq_score:50;min_depth:100 AN=2;DP=91;MQ=15.34;MQ0=77 GT:DP 0/0:91
292 gi|15829254|ref|NC_002695.1| 227119 . C . 67.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=14.84;MQ0=77 GT:DP 0/0:90
293 gi|15829254|ref|NC_002695.1| 227120 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=15.26;MQ0=78 GT:DP 0/0:92
294 gi|15829254|ref|NC_002695.1| 227121 . T . 67.23 mq_score:50;min_depth:100 AN=2;DP=91;MQ=14.76;MQ0=78 GT:DP 0/0:91
295 gi|15829254|ref|NC_002695.1| 227122 . G . 76.23 mq_score:50 AN=2;DP=101;MQ=15.3;MQ0=85 GT:DP 0/0:101
296 gi|15829254|ref|NC_002695.1| 227123 . G . 76.23 mq_score:50 AN=2;DP=101;MQ=15.3;MQ0=85 GT:DP 0/0:101
297 gi|15829254|ref|NC_002695.1| 227124 . C . 76.23 mq_score:50 AN=2;DP=101;MQ=15.3;MQ0=85 GT:DP 0/0:101
298 gi|15829254|ref|NC_002695.1| 227125 . T . 82.23 mq_score:50 AN=2;DP=104;MQ=16.07;MQ0=86 GT:DP 0/0:104
299 gi|15829254|ref|NC_002695.1| 227126 . C . 82.23 mq_score:50 AN=2;DP=106;MQ=15.92;MQ0=88 GT:DP 0/0:106
300 gi|15829254|ref|NC_002695.1| 227127 . A . 82.23 mq_score:50 AN=2;DP=107;MQ=15.84;MQ0=89 GT:DP 0/0:107
301 gi|15829254|ref|NC_002695.1| 227128 . G . 82.23 mq_score:50 AN=2;DP=107;MQ=15.84;MQ0=89 GT:DP 0/0:107
302 gi|15829254|ref|NC_002695.1| 227129 . A . 79.23 mq_score:50 AN=2;DP=106;MQ=15.92;MQ0=88 GT:DP 0/0:103
303 gi|15829254|ref|NC_002695.1| 227130 . T . 85.23 mq_score:50 AN=2;DP=106;MQ=16.38;MQ0=87 GT:DP 0/0:106
304 gi|15829254|ref|NC_002695.1| 227131 . T . 85.23 mq_score:50 AN=2;DP=105;MQ=16.46;MQ0=86 GT:DP 0/0:105
305 gi|15829254|ref|NC_002695.1| 227132 . G . 82.23 mq_score:50 AN=2;DP=105;MQ=16.46;MQ0=86 GT:DP 0/0:105
306 gi|15829254|ref|NC_002695.1| 227133 . A . 85.23 mq_score:50 AN=2;DP=105;MQ=16.46;MQ0=86 GT:DP 0/0:105
307 gi|15829254|ref|NC_002695.1| 227134 . A . 85.23 mq_score:50 AN=2;DP=106;MQ=16.38;MQ0=87 GT:DP 0/0:106
308 gi|15829254|ref|NC_002695.1| 227135 . C . 85.23 mq_score:50 AN=2;DP=106;MQ=16.38;MQ0=87 GT:DP 0/0:106
309 gi|15829254|ref|NC_002695.1| 227136 . G . 76.23 mq_score:50 AN=2;DP=104;MQ=15.58;MQ0=87 GT:DP 0/0:104
310 gi|15829254|ref|NC_002695.1| 227137 . C . 73.23 mq_score:50 AN=2;DP=102;MQ=15.23;MQ0=86 GT:DP 0/0:102
311 gi|15829254|ref|NC_002695.1| 227138 . T . 76.23 mq_score:50 AN=2;DP=100;MQ=15.38;MQ0=84 GT:DP 0/0:100
312 gi|15829254|ref|NC_002695.1| 227139 . G . 76.23 mq_score:50 AN=2;DP=100;MQ=15.38;MQ0=84 GT:DP 0/0:100
313 gi|15829254|ref|NC_002695.1| 227140 . G . 76.23 mq_score:50 AN=2;DP=100;MQ=15.38;MQ0=84 GT:DP 0/0:100
314 gi|15829254|ref|NC_002695.1| 227141 . C . 76.23 mq_score:50 AN=2;DP=100;MQ=15.38;MQ0=84 GT:DP 0/0:100
315 gi|15829254|ref|NC_002695.1| 227142 . G . 76.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=15.61;MQ0=81 GT:DP 0/0:97
316 gi|15829254|ref|NC_002695.1| 227143 . G . 76.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=15.95;MQ0=77 GT:DP 0/0:93
317 gi|15829254|ref|NC_002695.1| 227144 . C . 76.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=16.03;MQ0=76 GT:DP 0/0:92
318 gi|15829254|ref|NC_002695.1| 227145 . A . 76.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=15.95;MQ0=77 GT:DP 0/0:93
319 gi|15829254|ref|NC_002695.1| 227146 . G . 76.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=15.61;MQ0=81 GT:DP 0/0:97
320 gi|15829254|ref|NC_002695.1| 227147 . G . 76.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=15.61;MQ0=81 GT:DP 0/0:97
321 gi|15829254|ref|NC_002695.1| 227148 . C . 73.23 mq_score:50;min_depth:100 AN=2;DP=96;MQ=15.7;MQ0=80 GT:DP 0/0:96
322 gi|15829254|ref|NC_002695.1| 227149 . C . 76.23 mq_score:50;min_depth:100 AN=2;DP=96;MQ=15.7;MQ0=80 GT:DP 0/0:96
323 gi|15829254|ref|NC_002695.1| 227150 . T . 76.23 mq_score:50;min_depth:100 AN=2;DP=96;MQ=15.7;MQ0=80 GT:DP 0/0:96
324 gi|15829254|ref|NC_002695.1| 227151 . A . 76.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=15.53;MQ0=82 GT:DP 0/0:98
325 gi|15829254|ref|NC_002695.1| 227152 . A . 76.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=15.53;MQ0=82 GT:DP 0/0:98
326 gi|15829254|ref|NC_002695.1| 227153 . C . 76.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=15.53;MQ0=82 GT:DP 0/0:98
327 gi|15829254|ref|NC_002695.1| 227154 . A . 73.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=15.08;MQ0=82 GT:DP 0/0:97
328 gi|15829254|ref|NC_002695.1| 227155 . C . 73.23 mq_score:50;min_depth:100 AN=2;DP=96;MQ=15.16;MQ0=81 GT:DP 0/0:96
329 gi|15829254|ref|NC_002695.1| 227156 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=15.26;MQ0=78 GT:DP 0/0:92
330 gi|15829254|ref|NC_002695.1| 227157 . T . 67.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=15.43;MQ0=76 GT:DP 0/0:90
331 gi|15829254|ref|NC_002695.1| 227158 . G . 70.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=15.69;MQ0=73 GT:DP 0/0:87
332 gi|15829254|ref|NC_002695.1| 227159 . C . 70.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=15.69;MQ0=73 GT:DP 0/0:87
333 gi|15829254|ref|NC_002695.1| 227160 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=15.69;MQ0=73 GT:DP 0/0:87
334 gi|15829254|ref|NC_002695.1| 227161 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=15.69;MQ0=73 GT:DP 0/0:87
335 gi|15829254|ref|NC_002695.1| 227162 . G . 70.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=15.6;MQ0=74 GT:DP 0/0:88
336 gi|15829254|ref|NC_002695.1| 227163 . T . 79.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.07;MQ0=73 GT:DP 0/0:90
337 gi|15829254|ref|NC_002695.1| 227164 . C . 79.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.07;MQ0=73 GT:DP 0/0:90
338 gi|15829254|ref|NC_002695.1| 227165 . G . 79.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=17.17;MQ0=72 GT:DP 0/0:89
339 gi|15829254|ref|NC_002695.1| 227166 . A . 79.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=17.17;MQ0=72 GT:DP 0/0:89
340 gi|15829254|ref|NC_002695.1| 227167 . A . 79.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=17.17;MQ0=72 GT:DP 0/0:89
341 gi|15829254|ref|NC_002695.1| 227168 . C . 79.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=17.17;MQ0=72 GT:DP 0/0:89
342 gi|15829254|ref|NC_002695.1| 227169 . G . 79.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=17.26;MQ0=71 GT:DP 0/0:88
343 gi|15829254|ref|NC_002695.1| 227170 . G . 79.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=16.88;MQ0=75 GT:DP 0/0:92
344 gi|15829254|ref|NC_002695.1| 227171 . T . 79.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=16.88;MQ0=75 GT:DP 0/0:92
345 gi|15829254|ref|NC_002695.1| 227172 . A . 79.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=16.88;MQ0=75 GT:DP 0/0:92
346 gi|15829254|ref|NC_002695.1| 227173 . A . 85.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=17.69;MQ0=75 GT:DP 0/0:94
347 gi|15829254|ref|NC_002695.1| 227174 . C . 85.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=17.69;MQ0=75 GT:DP 0/0:94
348 gi|15829254|ref|NC_002695.1| 227175 . A . 88.23 mq_score:50;min_depth:100 AN=2;DP=92;MQ=18.1;MQ0=72 GT:DP 0/0:92
349 gi|15829254|ref|NC_002695.1| 227176 . G . 88.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=17.91;MQ0=74 GT:DP 0/0:94
350 gi|15829254|ref|NC_002695.1| 227177 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=17.07;MQ0=79 GT:DP 0/0:98
351 gi|15829254|ref|NC_002695.1| 227178 . A . 85.23 mq_score:50;min_depth:100 AN=2;DP=98;MQ=17.07;MQ0=79 GT:DP 0/0:98
352 gi|15829254|ref|NC_002695.1| 227179 . A . 85.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=17.52;MQ0=74 GT:DP 0/0:93
353 gi|15829254|ref|NC_002695.1| 227180 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=17.52;MQ0=74 GT:DP 0/0:93
354 gi|15829254|ref|NC_002695.1| 227181 . A . 85.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=17.52;MQ0=74 GT:DP 0/0:90
355 gi|15829254|ref|NC_002695.1| 227182 . A . 85.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=17.52;MQ0=74 GT:DP 0/0:93
356 gi|15829254|ref|NC_002695.1| 227183 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=93;MQ=17.52;MQ0=74 GT:DP 0/0:93
357 gi|15829254|ref|NC_002695.1| 227184 . C . 85.23 mq_score:50;min_depth:100 AN=2;DP=91;MQ=17.71;MQ0=72 GT:DP 0/0:91
358 gi|15829254|ref|NC_002695.1| 227185 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=91;MQ=17.71;MQ0=72 GT:DP 0/0:91
359 gi|15829254|ref|NC_002695.1| 227186 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=17.91;MQ0=70 GT:DP 0/0:89
360 gi|15829254|ref|NC_002695.1| 227187 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.81;MQ0=71 GT:DP 0/0:90
361 gi|15829254|ref|NC_002695.1| 227188 . C . 85.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.81;MQ0=71 GT:DP 0/0:90
362 gi|15829254|ref|NC_002695.1| 227189 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.81;MQ0=71 GT:DP 0/0:90
363 gi|15829254|ref|NC_002695.1| 227190 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.81;MQ0=71 GT:DP 0/0:90
364 gi|15829254|ref|NC_002695.1| 227191 . C . 82.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.81;MQ0=71 GT:DP 0/0:90
365 gi|15829254|ref|NC_002695.1| 227192 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.81;MQ0=71 GT:DP 0/0:90
366 gi|15829254|ref|NC_002695.1| 227193 . T . 82.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.81;MQ0=71 GT:DP 0/0:90
367 gi|15829254|ref|NC_002695.1| 227194 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.81;MQ0=71 GT:DP 0/0:90
368 gi|15829254|ref|NC_002695.1| 227195 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=90;MQ=17.81;MQ0=71 GT:DP 0/0:90
369 gi|15829254|ref|NC_002695.1| 227196 . C . 85.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=17.91;MQ0=70 GT:DP 0/0:89
370 gi|15829254|ref|NC_002695.1| 227197 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=18.12;MQ0=68 GT:DP 0/0:87
371 gi|15829254|ref|NC_002695.1| 227198 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=18.12;MQ0=68 GT:DP 0/0:87
372 gi|15829254|ref|NC_002695.1| 227199 . A . 85.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=18.12;MQ0=68 GT:DP 0/0:87
373 gi|15829254|ref|NC_002695.1| 227200 . C . 85.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=18.12;MQ0=68 GT:DP 0/0:87
374 gi|15829254|ref|NC_002695.1| 227201 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=18.01;MQ0=69 GT:DP 0/0:88
375 gi|15829254|ref|NC_002695.1| 227202 . A . 85.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=18.01;MQ0=69 GT:DP 0/0:88
376 gi|15829254|ref|NC_002695.1| 227203 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=18.01;MQ0=69 GT:DP 0/0:88
377 gi|15829254|ref|NC_002695.1| 227204 . T . 82.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=17.6;MQ0=69 GT:DP 0/0:87
378 gi|15829254|ref|NC_002695.1| 227205 . G . 82.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=17.6;MQ0=69 GT:DP 0/0:87
379 gi|15829254|ref|NC_002695.1| 227206 . G . 82.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=17.6;MQ0=69 GT:DP 0/0:87
380 gi|15829254|ref|NC_002695.1| 227207 . C . 82.23 mq_score:50;min_depth:100 AN=2;DP=88;MQ=17.5;MQ0=70 GT:DP 0/0:87
381 gi|15829254|ref|NC_002695.1| 227208 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=17.91;MQ0=70 GT:DP 0/0:89
382 gi|15829254|ref|NC_002695.1| 227209 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=89;MQ=17.91;MQ0=70 GT:DP 0/0:89
383 gi|15829254|ref|NC_002695.1| 227210 . A . 85.23 mq_score:50;min_depth:100 AN=2;DP=82;MQ=18.66;MQ0=63 GT:DP 0/0:82
384 gi|15829254|ref|NC_002695.1| 227211 . C . 85.23 mq_score:50;min_depth:100 AN=2;DP=82;MQ=18.66;MQ0=63 GT:DP 0/0:82
385 gi|15829254|ref|NC_002695.1| 227212 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=80;MQ=18.89;MQ0=61 GT:DP 0/0:80
386 gi|15829254|ref|NC_002695.1| 227213 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=79;MQ=19.01;MQ0=60 GT:DP 0/0:79
387 gi|15829254|ref|NC_002695.1| 227214 . G . 85.23 mq_score:50;min_depth:100 AN=2;DP=79;MQ=19.01;MQ0=60 GT:DP 0/0:79
388 gi|15829254|ref|NC_002695.1| 227215 . T . 85.23 mq_score:50;min_depth:100 AN=2;DP=74;MQ=19.64;MQ0=55 GT:DP 0/0:74
389 gi|15829254|ref|NC_002695.1| 227216 . G . 88.23 mq_score:50;min_depth:100 AN=2;DP=76;MQ=19.92;MQ0=56 GT:DP 0/0:76
390 gi|15829254|ref|NC_002695.1| 227217 . A . 88.23 mq_score:50;min_depth:100 AN=2;DP=76;MQ=19.92;MQ0=56 GT:DP 0/0:76
391 gi|15829254|ref|NC_002695.1| 227218 . G . 88.23 mq_score:50;min_depth:100 AN=2;DP=76;MQ=19.92;MQ0=56 GT:DP 0/0:76
392 gi|15829254|ref|NC_002695.1| 227219 . T . 88.23 mq_score:50;min_depth:100 AN=2;DP=76;MQ=19.92;MQ0=56 GT:DP 0/0:75
393 gi|15829254|ref|NC_002695.1| 227220 . A . 82.23 mq_score:50;min_depth:100 AN=2;DP=73;MQ=19.22;MQ0=55 GT:DP 0/0:73
394 gi|15829254|ref|NC_002695.1| 227221 . A . 82.23 mq_score:50;min_depth:100 AN=2;DP=73;MQ=19.22;MQ0=55 GT:DP 0/0:73
395 gi|15829254|ref|NC_002695.1| 227222 . T . 73.23 mq_score:50;min_depth:100 AN=2;DP=63;MQ=19.16;MQ0=48 GT:DP 0/0:63
396 gi|15829254|ref|NC_002695.1| 227223 . G . 73.23 mq_score:50;min_depth:100 AN=2;DP=65;MQ=18.86;MQ0=50 GT:DP 0/0:64
397 gi|15829254|ref|NC_002695.1| 227224 . T . 70.23 mq_score:50;min_depth:100 AN=2;DP=65;MQ=18.86;MQ0=50 GT:DP 0/0:65
398 gi|15829254|ref|NC_002695.1| 227225 . C . 67.23 mq_score:50;min_depth:100 AN=2;DP=61;MQ=18.07;MQ0=48 GT:DP 0/0:61
399 gi|15829254|ref|NC_002695.1| 227226 . T . 67.23 mq_score:50;min_depth:100 AN=2;DP=58;MQ=18.54;MQ0=45 GT:DP 0/0:58
400 gi|15829254|ref|NC_002695.1| 227227 . G . 67.23 mq_score:50;min_depth:100 AN=2;DP=57;MQ=18.7;MQ0=44 GT:DP 0/0:57
401 gi|15829254|ref|NC_002695.1| 227228 . G . 67.23 mq_score:50;min_depth:100 AN=2;DP=57;MQ=18.7;MQ0=44 GT:DP 0/0:57
402 gi|15829254|ref|NC_002695.1| 227229 . G . 64.23 mq_score:50;min_depth:100 AN=2;DP=57;MQ=18.7;MQ0=44 GT:DP 0/0:57
403 gi|15829254|ref|NC_002695.1| 227230 . A . 64.23 mq_score:50;min_depth:100 AN=2;DP=55;MQ=18.26;MQ0=43 GT:DP 0/0:55
404 gi|15829254|ref|NC_002695.1| 227231 . A . 58.23 mq_score:50;min_depth:100 AN=2;DP=53;MQ=17.77;MQ0=42 GT:DP 0/0:53
405 gi|15829254|ref|NC_002695.1| 227232 . A . 61.23 mq_score:50;min_depth:100 AN=2;DP=49;MQ=18.48;MQ0=38 GT:DP 0/0:49
406 gi|15829254|ref|NC_002695.1| 227233 . C . 61.23 mq_score:50;min_depth:100 AN=2;DP=49;MQ=18.48;MQ0=38 GT:DP 0/0:49
407 gi|15829254|ref|NC_002695.1| 227234 . T . 61.23 mq_score:50;min_depth:100 AN=2;DP=48;MQ=18.67;MQ0=37 GT:DP 0/0:48
408 gi|15829254|ref|NC_002695.1| 227235 . G . 61.23 mq_score:50;min_depth:100 AN=2;DP=50;MQ=18.29;MQ0=39 GT:DP 0/0:48
409 gi|15829254|ref|NC_002695.1| 227236 . C . 61.23 mq_score:50;min_depth:100 AN=2;DP=50;MQ=18.29;MQ0=39 GT:DP 0/0:50
410 gi|15829254|ref|NC_002695.1| 227237 . C . 64.23 mq_score:50;min_depth:100 AN=2;DP=51;MQ=18.96;MQ0=39 GT:DP 0/0:51
411 gi|15829254|ref|NC_002695.1| 227238 . T . 64.23 mq_score:50;min_depth:100 AN=2;DP=51;MQ=18.96;MQ0=39 GT:DP 0/0:51
412 gi|15829254|ref|NC_002695.1| 227239 . G . 64.23 mq_score:50;min_depth:100 AN=2;DP=52;MQ=18.77;MQ0=40 GT:DP 0/0:52
413 gi|15829254|ref|NC_002695.1| 227240 . A . 64.23 mq_score:50;min_depth:100 AN=2;DP=54;MQ=18.42;MQ0=42 GT:DP 0/0:54
414 gi|15829254|ref|NC_002695.1| 227241 . T . 61.23 mq_score:50;min_depth:100 AN=2;DP=54;MQ=18.42;MQ0=42 GT:DP 0/0:54
415 gi|15829254|ref|NC_002695.1| 227242 . G . 64.23 mq_score:50;min_depth:100 AN=2;DP=53;MQ=18.6;MQ0=41 GT:DP 0/0:53
416 gi|15829254|ref|NC_002695.1| 227243 . G . 64.23 mq_score:50;min_depth:100 AN=2;DP=52;MQ=18.77;MQ0=40 GT:DP 0/0:52
417 gi|15829254|ref|NC_002695.1| 227244 . A . 64.23 mq_score:50;min_depth:100 AN=2;DP=50;MQ=19.15;MQ0=38 GT:DP 0/0:50
418 gi|15829254|ref|NC_002695.1| 227245 . G . 67.23 mq_score:50;min_depth:100 AN=2;DP=51;MQ=19.77;MQ0=38 GT:DP 0/0:51
419 gi|15829254|ref|NC_002695.1| 227246 . A . 67.23 mq_score:50;min_depth:100 AN=2;DP=48;MQ=20.38;MQ0=35 GT:DP 0/0:48
420 gi|15829254|ref|NC_002695.1| 227247 . G . 67.23 mq_score:50;min_depth:100 AN=2;DP=56;MQ=18.86;MQ0=43 GT:DP 0/0:56
421 gi|15829254|ref|NC_002695.1| 227248 . G . 67.23 mq_score:50;min_depth:100 AN=2;DP=57;MQ=18.7;MQ0=44 GT:DP 0/0:57
422 gi|15829254|ref|NC_002695.1| 227249 . G . 67.23 mq_score:50;min_depth:100 AN=2;DP=58;MQ=18.54;MQ0=45 GT:DP 0/0:58
423 gi|15829254|ref|NC_002695.1| 227250 . A . 67.23 mq_score:50;min_depth:100 AN=2;DP=57;MQ=18.7;MQ0=44 GT:DP 0/0:57
424 gi|15829254|ref|NC_002695.1| 227251 . T . 70.23 mq_score:50;min_depth:100 AN=2;DP=62;MQ=18.63;MQ0=48 GT:DP 0/0:62
425 gi|15829254|ref|NC_002695.1| 227252 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=63;MQ=18.49;MQ0=49 GT:DP 0/0:63
426 gi|15829254|ref|NC_002695.1| 227253 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=63;MQ=18.49;MQ0=49 GT:DP 0/0:63
427 gi|15829254|ref|NC_002695.1| 227254 . C . 70.23 mq_score:50;min_depth:100 AN=2;DP=64;MQ=18.34;MQ0=50 GT:DP 0/0:64
428 gi|15829254|ref|NC_002695.1| 227255 . T . 67.23 mq_score:50;min_depth:100 AN=2;DP=60;MQ=18.22;MQ0=47 GT:DP 0/0:60
429 gi|15829254|ref|NC_002695.1| 227256 . A . 64.23 mq_score:50;min_depth:100 AN=2;DP=61;MQ=17.33;MQ0=49 GT:DP 0/0:61
430 gi|15829254|ref|NC_002695.1| 227257 . C . 64.23 mq_score:50;min_depth:100 AN=2;DP=66;MQ=16.66;MQ0=54 GT:DP 0/0:66
431 gi|15829254|ref|NC_002695.1| 227258 . T . 67.23 mq_score:50;min_depth:100 AN=2;DP=67;MQ=17.25;MQ0=54 GT:DP 0/0:67
432 gi|15829254|ref|NC_002695.1| 227259 . G . 67.23 mq_score:50;min_depth:100 AN=2;DP=68;MQ=17.12;MQ0=55 GT:DP 0/0:68
433 gi|15829254|ref|NC_002695.1| 227260 . G . 67.23 mq_score:50;min_depth:100 AN=2;DP=70;MQ=16.87;MQ0=57 GT:DP 0/0:70
434 gi|15829254|ref|NC_002695.1| 227261 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=73;MQ=17.17;MQ0=59 GT:DP 0/0:73
435 gi|15829254|ref|NC_002695.1| 227262 . A . 70.23 mq_score:50;min_depth:100 AN=2;DP=73;MQ=17.17;MQ0=59 GT:DP 0/0:73
436 gi|15829254|ref|NC_002695.1| 227263 . A . 61.23 mq_score:50;min_depth:100 AN=2;DP=67;MQ=15.8;MQ0=56 GT:DP 0/0:67
437 gi|15829254|ref|NC_002695.1| 227264 . C . 61.23 mq_score:50;min_depth:100 AN=2;DP=70;MQ=15.46;MQ0=59 GT:DP 0/0:70
438 gi|15829254|ref|NC_002695.1| 227265 . G . 61.23 mq_score:50;min_depth:100 AN=2;DP=69;MQ=15.57;MQ0=58 GT:DP 0/0:69
439 gi|15829254|ref|NC_002695.1| 227266 . G . 61.23 mq_score:50;min_depth:100 AN=2;DP=73;MQ=15.14;MQ0=62 GT:DP 0/0:73
440 gi|15829254|ref|NC_002695.1| 227267 . T . 61.23 mq_score:50;min_depth:100 AN=2;DP=73;MQ=15.14;MQ0=62 GT:DP 0/0:73
441 gi|15829254|ref|NC_002695.1| 227268 . A . 61.23 mq_score:50;min_depth:100 AN=2;DP=83;MQ=14.2;MQ0=72 GT:DP 0/0:83
442 gi|15829254|ref|NC_002695.1| 227269 . G . 61.23 mq_score:50;min_depth:100 AN=2;DP=83;MQ=14.2;MQ0=72 GT:DP 0/0:82
443 gi|15829254|ref|NC_002695.1| 227270 . C . 61.23 mq_score:50;min_depth:100 AN=2;DP=82;MQ=14.28;MQ0=71 GT:DP 0/0:82
444 gi|15829254|ref|NC_002695.1| 227271 . T . 61.23 mq_score:50;min_depth:100 AN=2;DP=82;MQ=14.28;MQ0=71 GT:DP 0/0:82
445 gi|15829254|ref|NC_002695.1| 227272 . A . 61.23 mq_score:50;min_depth:100 AN=2;DP=82;MQ=14.28;MQ0=71 GT:DP 0/0:82
446 gi|15829254|ref|NC_002695.1| 227273 . A . 55.23 mq_score:50;min_depth:100 AN=2;DP=81;MQ=12.92;MQ0=72 GT:DP 0/0:81
447 gi|15829254|ref|NC_002695.1| 227274 . T . 55.23 mq_score:50;min_depth:100 AN=2;DP=83;MQ=12.77;MQ0=74 GT:DP 0/0:83
448 gi|15829254|ref|NC_002695.1| 227275 . A . 49.23 mq_score:50;min_depth:100 AN=2;DP=82;MQ=12.49;MQ0=74 GT:DP 0/0:79
449 gi|15829254|ref|NC_002695.1| 227276 . C . 52.23 mq_score:50;min_depth:100 AN=2;DP=82;MQ=12.49;MQ0=74 GT:DP 0/0:82
450 gi|15829254|ref|NC_002695.1| 227277 . C . 52.23 mq_score:50;min_depth:100 AN=2;DP=77;MQ=12.89;MQ0=69 GT:DP 0/0:77
451 gi|15829254|ref|NC_002695.1| 227278 . G . 52.23 mq_score:50;min_depth:100 AN=2;DP=79;MQ=12.73;MQ0=71 GT:DP 0/0:79
452 gi|15829254|ref|NC_002695.1| 227279 . C . 55.23 mq_score:50;min_depth:100 AN=2;DP=80;MQ=13.42;MQ0=71 GT:DP 0/0:80
453 gi|15829254|ref|NC_002695.1| 227280 . A . 55.23 mq_score:50;min_depth:100 AN=2;DP=80;MQ=13.42;MQ0=71 GT:DP 0/0:80
454 gi|15829254|ref|NC_002695.1| 227281 . T . 55.23 mq_score:50;min_depth:100 AN=2;DP=80;MQ=13.42;MQ0=71 GT:DP 0/0:80
455 gi|15829254|ref|NC_002695.1| 227282 . A . 55.23 mq_score:50;min_depth:100 AN=2;DP=78;MQ=13.59;MQ0=69 GT:DP 0/0:78
456 gi|15829254|ref|NC_002695.1| 227283 . A . 55.23 mq_score:50;min_depth:100 AN=2;DP=78;MQ=13.59;MQ0=69 GT:DP 0/0:78
457 gi|15829254|ref|NC_002695.1| 227284 . C . 55.23 mq_score:50;min_depth:100 AN=2;DP=78;MQ=13.59;MQ0=69 GT:DP 0/0:78
458 gi|15829254|ref|NC_002695.1| 227285 . G . 55.23 mq_score:50;min_depth:100 AN=2;DP=78;MQ=13.59;MQ0=69 GT:DP 0/0:78
459 gi|15829254|ref|NC_002695.1| 227286 . T . 55.23 mq_score:50;min_depth:100 AN=2;DP=79;MQ=13.5;MQ0=70 GT:DP 0/0:79
460 gi|15829254|ref|NC_002695.1| 227287 . C . 55.23 mq_score:50;min_depth:100 AN=2;DP=78;MQ=13.59;MQ0=69 GT:DP 0/0:78
461 gi|15829254|ref|NC_002695.1| 227288 . G . 55.23 mq_score:50;min_depth:100 AN=2;DP=78;MQ=13.59;MQ0=69 GT:DP 0/0:78
462 gi|15829254|ref|NC_002695.1| 227289 . C . 55.23 mq_score:50;min_depth:100 AN=2;DP=78;MQ=13.59;MQ0=69 GT:DP 0/0:77
463 gi|15829254|ref|NC_002695.1| 227290 . A . 55.23 mq_score:50;min_depth:100 AN=2;DP=78;MQ=13.59;MQ0=69 GT:DP 0/0:78
464 gi|15829254|ref|NC_002695.1| 227291 . A . 55.23 mq_score:50;min_depth:100 AN=2;DP=80;MQ=13.42;MQ0=71 GT:DP 0/0:80
465 gi|15829254|ref|NC_002695.1| 227292 . G . 55.23 mq_score:50;min_depth:100 AN=2;DP=87;MQ=12.87;MQ0=78 GT:DP 0/0:87
466 gi|15829254|ref|NC_002695.1| 227293 . A . 52.23 mq_score:50;min_depth:100 AN=2;DP=94;MQ=12.38;MQ0=85 GT:DP 0/0:92
467 gi|15829254|ref|NC_002695.1| 227294 . C . 55.23 mq_score:50;min_depth:100 AN=2;DP=95;MQ=12.31;MQ0=86 GT:DP 0/0:95
468 gi|15829254|ref|NC_002695.1| 227295 . C . 55.23 mq_score:50;min_depth:100 AN=2;DP=96;MQ=12.25;MQ0=87 GT:DP 0/0:96
469 gi|15829254|ref|NC_002695.1| 227296 . A . 55.23 mq_score:50;min_depth:100 AN=2;DP=96;MQ=12.25;MQ0=87 GT:DP 0/0:96
470 gi|15829254|ref|NC_002695.1| 227297 . A . 55.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=12.18;MQ0=88 GT:DP 0/0:97
471 gi|15829254|ref|NC_002695.1| 227298 . A . 55.23 mq_score:50;min_depth:100 AN=2;DP=97;MQ=12.18;MQ0=88 GT:DP 0/0:97
472 gi|15829254|ref|NC_002695.1| 227299 . G . 55.23 mq_score:50 AN=2;DP=101;MQ=11.94;MQ0=92 GT:DP 0/0:101
473 gi|15829254|ref|NC_002695.1| 227300 . A . 55.23 mq_score:50 AN=2;DP=101;MQ=11.94;MQ0=92 GT:DP 0/0:101
474 gi|15829254|ref|NC_002695.1| 227301 . G . 55.23 mq_score:50 AN=2;DP=100;MQ=12.0;MQ0=91 GT:DP 0/0:100
475 gi|15829254|ref|NC_002695.1| 227302 . G . 55.23 mq_score:50 AN=2;DP=103;MQ=11.82;MQ0=94 GT:DP 0/0:103
476 gi|15829254|ref|NC_002695.1| 227303 . G . 55.23 mq_score:50 AN=2;DP=103;MQ=11.82;MQ0=94 GT:DP 0/0:103
477 gi|15829254|ref|NC_002695.1| 227304 . G . 55.23 mq_score:50 AN=2;DP=103;MQ=11.82;MQ0=94 GT:DP 0/0:103
478 gi|15829254|ref|NC_002695.1| 227305 . G . 55.23 mq_score:50 AN=2;DP=103;MQ=11.82;MQ0=94 GT:DP 0/0:103
479 gi|15829254|ref|NC_002695.1| 227306 . A . 55.23 mq_score:50 AN=2;DP=103;MQ=11.82;MQ0=94 GT:DP 0/0:103
480 gi|15829254|ref|NC_002695.1| 227307 . C . 55.23 mq_score:50 AN=2;DP=107;MQ=11.6;MQ0=98 GT:DP 0/0:107
481 gi|15829254|ref|NC_002695.1| 227308 . C . 52.23 mq_score:50 AN=2;DP=106;MQ=10.99;MQ0=98 GT:DP 0/0:106
482 gi|15829254|ref|NC_002695.1| 227309 . T . 52.23 mq_score:50 AN=2;DP=109;MQ=10.84;MQ0=101 GT:DP 0/0:109
483 gi|15829254|ref|NC_002695.1| 227310 . T . 52.23 mq_score:50 AN=2;DP=110;MQ=10.79;MQ0=102 GT:DP 0/0:110
484 gi|15829254|ref|NC_002695.1| 227311 . C . 52.23 mq_score:50 AN=2;DP=110;MQ=10.79;MQ0=102 GT:DP 0/0:110
485 gi|15829254|ref|NC_002695.1| 227312 . G . 52.23 mq_score:50 AN=2;DP=110;MQ=10.79;MQ0=102 GT:DP 0/0:110
486 gi|15829254|ref|NC_002695.1| 227313 . G . 52.23 mq_score:50 AN=2;DP=110;MQ=10.79;MQ0=102 GT:DP 0/0:110
487 gi|15829254|ref|NC_002695.1| 227314 . G . 52.23 mq_score:50 AN=2;DP=110;MQ=10.79;MQ0=102 GT:DP 0/0:110
488 gi|15829254|ref|NC_002695.1| 227315 . C . 52.23 mq_score:50 AN=2;DP=110;MQ=10.79;MQ0=102 GT:DP 0/0:110
489 gi|15829254|ref|NC_002695.1| 227316 . C . 49.23 mq_score:50 AN=2;DP=108;MQ=10.18;MQ0=101 GT:DP 0/0:108
490 gi|15829254|ref|NC_002695.1| 227317 . T . 49.23 mq_score:50 AN=2;DP=106;MQ=10.28;MQ0=99 GT:DP 0/0:106
491 gi|15829254|ref|NC_002695.1| 227318 . C . 49.23 mq_score:50 AN=2;DP=107;MQ=10.23;MQ0=100 GT:DP 0/0:107
492 gi|15829254|ref|NC_002695.1| 227319 . T . 49.23 mq_score:50 AN=2;DP=107;MQ=10.23;MQ0=100 GT:DP 0/0:107
493 gi|15829254|ref|NC_002695.1| 227320 . T . 49.23 mq_score:50 AN=2;DP=108;MQ=10.18;MQ0=101 GT:DP 0/0:108
494 gi|15829254|ref|NC_002695.1| 227321 . G . 49.23 mq_score:50 AN=2;DP=108;MQ=10.18;MQ0=101 GT:DP 0/0:108
495 gi|15829254|ref|NC_002695.1| 227322 . C . 49.23 mq_score:50 AN=2;DP=107;MQ=10.23;MQ0=100 GT:DP 0/0:107
496 gi|15829254|ref|NC_002695.1| 227323 . C . 49.23 mq_score:50 AN=2;DP=106;MQ=10.28;MQ0=99 GT:DP 0/0:106
497 gi|15829254|ref|NC_002695.1| 227324 . A . 49.23 mq_score:50 AN=2;DP=109;MQ=10.14;MQ0=102 GT:DP 0/0:109
498 gi|15829254|ref|NC_002695.1| 227325 . T . 49.23 mq_score:50 AN=2;DP=109;MQ=10.14;MQ0=102 GT:DP 0/0:109
499 gi|15829254|ref|NC_002695.1| 227326 . C . 49.23 mq_score:50 AN=2;DP=109;MQ=10.14;MQ0=102 GT:DP 0/0:109
500 gi|15829254|ref|NC_002695.1| 227327 . G . 49.23 mq_score:50 AN=2;DP=109;MQ=10.14;MQ0=102 GT:DP 0/0:109
501 gi|15829254|ref|NC_002695.1| 227328 . G . 49.23 mq_score:50 AN=2;DP=111;MQ=10.04;MQ0=104 GT:DP 0/0:111
502 gi|15829254|ref|NC_002695.1| 227329 . A . 49.23 mq_score:50 AN=2;DP=112;MQ=10.0;MQ0=105 GT:DP 0/0:112
503 gi|15829254|ref|NC_002695.1| 227330 . T . 49.23 mq_score:50 AN=2;DP=113;MQ=9.96;MQ0=106 GT:DP 0/0:113
504 gi|15829254|ref|NC_002695.1| 227331 . G . 49.23 mq_score:50 AN=2;DP=115;MQ=9.87;MQ0=108 GT:DP 0/0:115
505 gi|15829254|ref|NC_002695.1| 227332 . T . 49.23 mq_score:50 AN=2;DP=115;MQ=9.87;MQ0=108 GT:DP 0/0:115
506 gi|15829254|ref|NC_002695.1| 227333 . G . 49.23 mq_score:50 AN=2;DP=117;MQ=9.78;MQ0=110 GT:DP 0/0:117
507 gi|15829254|ref|NC_002695.1| 227334 . C . 49.23 mq_score:50 AN=2;DP=117;MQ=9.78;MQ0=110 GT:DP 0/0:117
508 gi|15829254|ref|NC_002695.1| 227335 . C . 49.23 mq_score:50 AN=2;DP=116;MQ=9.83;MQ0=109 GT:DP 0/0:116
509 gi|15829254|ref|NC_002695.1| 227336 . C . 49.23 mq_score:50 AN=2;DP=116;MQ=9.83;MQ0=109 GT:DP 0/0:116
510 gi|15829254|ref|NC_002695.1| 227337 . A . 46.23 mq_score:50 AN=2;DP=116;MQ=9.1;MQ0=110 GT:DP 0/0:116
511 gi|15829254|ref|NC_002695.1| 227338 . G . 46.23 mq_score:50 AN=2;DP=117;MQ=9.06;MQ0=111 GT:DP 0/0:117
512 gi|15829254|ref|NC_002695.1| 227339 . A . 46.23 mq_score:50 AN=2;DP=116;MQ=9.1;MQ0=110 GT:DP 0/0:113
513 gi|15829254|ref|NC_002695.1| 227340 . T . 46.23 mq_score:50 AN=2;DP=115;MQ=9.14;MQ0=109 GT:DP 0/0:115
514 gi|15829254|ref|NC_002695.1| 227341 . G . 46.23 mq_score:50 AN=2;DP=116;MQ=9.1;MQ0=110 GT:DP 0/0:116
515 gi|15829254|ref|NC_002695.1| 227342 . G . 49.23 mq_score:50 AN=2;DP=129;MQ=9.32;MQ0=122 GT:DP 0/0:129
516 gi|15829254|ref|NC_002695.1| 227343 . G . 49.23 mq_score:50 AN=2;DP=129;MQ=9.32;MQ0=122 GT:DP 0/0:129
517 gi|15829254|ref|NC_002695.1| 227344 . A . 49.23 mq_score:50 AN=2;DP=129;MQ=9.32;MQ0=122 GT:DP 0/0:129
518 gi|15829254|ref|NC_002695.1| 227345 . T . 46.23 mq_score:50 AN=2;DP=128;MQ=8.66;MQ0=122 GT:DP 0/0:128
519 gi|15829254|ref|NC_002695.1| 227346 . T . 43.23 mq_score:50 AN=2;DP=128;MQ=8.66;MQ0=122 GT:DP 0/0:127
520 gi|15829254|ref|NC_002695.1| 227347 . A . 46.23 mq_score:50 AN=2;DP=128;MQ=8.66;MQ0=122 GT:DP 0/0:128
521 gi|15829254|ref|NC_002695.1| 227348 . G . 46.23 mq_score:50 AN=2;DP=127;MQ=8.69;MQ0=121 GT:DP 0/0:127
522 gi|15829254|ref|NC_002695.1| 227349 . C . 46.23 mq_score:50 AN=2;DP=128;MQ=8.66;MQ0=122 GT:DP 0/0:128
523 gi|15829254|ref|NC_002695.1| 227350 . T . 46.23 mq_score:50 AN=2;DP=128;MQ=8.66;MQ0=122 GT:DP 0/0:128
524 gi|15829254|ref|NC_002695.1| 227351 . A . 43.23 mq_score:50 AN=2;DP=125;MQ=8.0;MQ0=120 GT:DP 0/0:125
525 gi|15829254|ref|NC_002695.1| 227352 . G . 43.23 mq_score:50 AN=2;DP=124;MQ=8.03;MQ0=119 GT:DP 0/0:124
526 gi|15829254|ref|NC_002695.1| 227353 . T . 43.23 mq_score:50 AN=2;DP=125;MQ=8.0;MQ0=120 GT:DP 0/0:124
527 gi|15829254|ref|NC_002695.1| 227354 . A . 43.23 mq_score:50 AN=2;DP=125;MQ=8.0;MQ0=120 GT:DP 0/0:125
528 gi|15829254|ref|NC_002695.1| 227355 . G . 43.23 mq_score:50 AN=2;DP=125;MQ=8.0;MQ0=120 GT:DP 0/0:125
529 gi|15829254|ref|NC_002695.1| 227356 . G . 43.23 mq_score:50 AN=2;DP=123;MQ=8.06;MQ0=118 GT:DP 0/0:123
530 gi|15829254|ref|NC_002695.1| 227357 . T . 46.23 mq_score:50 AN=2;DP=119;MQ=8.98;MQ0=113 GT:DP 0/0:119
531 gi|15829254|ref|NC_002695.1| 227358 . G . 43.23 mq_score:50 AN=2;DP=117;MQ=8.27;MQ0=112 GT:DP 0/0:117
532 gi|15829254|ref|NC_002695.1| 227359 . G . 43.23 mq_score:50 AN=2;DP=121;MQ=8.13;MQ0=116 GT:DP 0/0:121
533 gi|15829254|ref|NC_002695.1| 227360 . G . 43.23 mq_score:50 AN=2;DP=119;MQ=8.2;MQ0=114 GT:DP 0/0:119
534 gi|15829254|ref|NC_002695.1| 227361 . G . 40.23 mq_score:50 AN=2;DP=116;MQ=7.43;MQ0=112 GT:DP 0/0:116
535 gi|15829254|ref|NC_002695.1| 227362 . T . 40.23 mq_score:50 AN=2;DP=116;MQ=7.43;MQ0=112 GT:DP 0/0:115
536 gi|15829254|ref|NC_002695.1| 227363 . A . 40.23 mq_score:50 AN=2;DP=115;MQ=7.46;MQ0=111 GT:DP 0/0:115
537 gi|15829254|ref|NC_002695.1| 227364 . A . 40.23 mq_score:50 AN=2;DP=113;MQ=7.53;MQ0=109 GT:DP 0/0:113
538 gi|15829254|ref|NC_002695.1| 227365 . C . 40.23 mq_score:50 AN=2;DP=114;MQ=7.49;MQ0=110 GT:DP 0/0:114
539 gi|15829254|ref|NC_002695.1| 227366 . G . 40.23 mq_score:50 AN=2;DP=110;MQ=7.63;MQ0=106 GT:DP 0/0:110
540 gi|15829254|ref|NC_002695.1| 227367 . G . 40.23 mq_score:50 AN=2;DP=111;MQ=7.59;MQ0=107 GT:DP 0/0:111
541 gi|15829254|ref|NC_002695.1| 227368 . C . 40.23 mq_score:50 AN=2;DP=105;MQ=7.81;MQ0=101 GT:DP 0/0:105
542 gi|15829254|ref|NC_002695.1| 227369 . T . 40.23 mq_score:50 AN=2;DP=104;MQ=7.84;MQ0=100 GT:DP 0/0:104
543 gi|15829254|ref|NC_002695.1| 227370 . C . 40.23 mq_score:50 AN=2;DP=106;MQ=7.77;MQ0=102 GT:DP 0/0:106
544 gi|15829254|ref|NC_002695.1| 227371 . A . 40.23 mq_score:50 AN=2;DP=106;MQ=7.77;MQ0=102 GT:DP 0/0:106
545 gi|15829254|ref|NC_002695.1| 227372 . C . 40.23 mq_score:50 AN=2;DP=110;MQ=7.63;MQ0=106 GT:DP 0/0:110
546 gi|15829254|ref|NC_002695.1| 227373 . C . 40.23 mq_score:50 AN=2;DP=109;MQ=7.66;MQ0=105 GT:DP 0/0:109
547 gi|15829254|ref|NC_002695.1| 227374 . T . 40.23 mq_score:50 AN=2;DP=111;MQ=7.59;MQ0=107 GT:DP 0/0:111
548 gi|15829254|ref|NC_002695.1| 227375 . A . 40.23 mq_score:50 AN=2;DP=111;MQ=7.59;MQ0=107 GT:DP 0/0:111
549 gi|15829254|ref|NC_002695.1| 227376 . G . 40.23 mq_score:50 AN=2;DP=110;MQ=7.63;MQ0=106 GT:DP 0/0:110
550 gi|15829254|ref|NC_002695.1| 227377 . G . 40.23 mq_score:50 AN=2;DP=110;MQ=7.63;MQ0=106 GT:DP 0/0:110
551 gi|15829254|ref|NC_002695.1| 227378 . C . 40.23 mq_score:50 AN=2;DP=109;MQ=7.66;MQ0=105 GT:DP 0/0:109
552 gi|15829254|ref|NC_002695.1| 227379 . G . 37.23 mq_score:50 AN=2;DP=108;MQ=6.67;MQ0=105 GT:DP 0/0:108
553 gi|15829254|ref|NC_002695.1| 227380 . A . 37.23 mq_score:50 AN=2;DP=108;MQ=6.67;MQ0=105 GT:DP 0/0:108
554 gi|15829254|ref|NC_002695.1| 227381 . C . 37.23 mq_score:50 AN=2;DP=108;MQ=6.67;MQ0=105 GT:DP 0/0:108
555 gi|15829254|ref|NC_002695.1| 227382 . G . 37.23 mq_score:50 AN=2;DP=108;MQ=6.67;MQ0=105 GT:DP 0/0:108
556 gi|15829254|ref|NC_002695.1| 227383 . A . 37.23 mq_score:50 AN=2;DP=119;MQ=6.35;MQ0=116 GT:DP 0/0:119
557 gi|15829254|ref|NC_002695.1| 227384 . T . 37.23 mq_score:50 AN=2;DP=124;MQ=6.22;MQ0=121 GT:DP 0/0:124
558 gi|15829254|ref|NC_002695.1| 227385 . C . 37.23 mq_score:50 AN=2;DP=124;MQ=6.22;MQ0=121 GT:DP 0/0:124
559 gi|15829254|ref|NC_002695.1| 227386 . C . 37.23 mq_score:50 AN=2;DP=123;MQ=6.25;MQ0=120 GT:DP 0/0:123
560 gi|15829254|ref|NC_002695.1| 227387 . C . 37.23 mq_score:50 AN=2;DP=125;MQ=6.2;MQ0=122 GT:DP 0/0:125
561 gi|15829254|ref|NC_002695.1| 227388 . T . 37.23 mq_score:50 AN=2;DP=128;MQ=6.12;MQ0=125 GT:DP 0/0:128
562 gi|15829254|ref|NC_002695.1| 227389 . A . 37.23 mq_score:50 AN=2;DP=128;MQ=6.12;MQ0=125 GT:DP 0/0:128
563 gi|15829254|ref|NC_002695.1| 227390 . G . 37.23 mq_score:50 AN=2;DP=126;MQ=6.17;MQ0=123 GT:DP 0/0:126
564 gi|15829254|ref|NC_002695.1| 227391 . C . 37.23 mq_score:50 AN=2;DP=126;MQ=6.17;MQ0=123 GT:DP 0/0:126
565 gi|15829254|ref|NC_002695.1| 227392 . T . 37.23 mq_score:50 AN=2;DP=119;MQ=6.35;MQ0=116 GT:DP 0/0:119
566 gi|15829254|ref|NC_002695.1| 227393 . G . 37.23 mq_score:50 AN=2;DP=114;MQ=6.49;MQ0=111 GT:DP 0/0:114
567 gi|15829254|ref|NC_002695.1| 227394 . G . 37.23 mq_score:50 AN=2;DP=114;MQ=6.49;MQ0=111 GT:DP 0/0:114
568 gi|15829254|ref|NC_002695.1| 227395 . T . 37.23 mq_score:50 AN=2;DP=114;MQ=6.49;MQ0=111 GT:DP 0/0:114
569 gi|15829254|ref|NC_002695.1| 227396 . C . 37.23 mq_score:50 AN=2;DP=114;MQ=6.49;MQ0=111 GT:DP 0/0:114
570 gi|15829254|ref|NC_002695.1| 227397 . T . 37.23 mq_score:50 AN=2;DP=113;MQ=6.52;MQ0=110 GT:DP 0/0:113
571 gi|15829254|ref|NC_002695.1| 227398 . G . 37.23 mq_score:50 AN=2;DP=114;MQ=6.49;MQ0=111 GT:DP 0/0:114
572 gi|15829254|ref|NC_002695.1| 227399 . A . 37.23 mq_score:50 AN=2;DP=111;MQ=6.58;MQ0=108 GT:DP 0/0:111
573 gi|15829254|ref|NC_002695.1| 227400 . G . 37.23 mq_score:50 AN=2;DP=112;MQ=6.55;MQ0=109 GT:DP 0/0:112
574 gi|15829254|ref|NC_002695.1| 227401 . A . 37.23 mq_score:50 AN=2;DP=112;MQ=6.55;MQ0=109 GT:DP 0/0:112
575 gi|15829254|ref|NC_002695.1| 227402 . G . 34.23 mq_score:50 AN=2;DP=108;MQ=5.44;MQ0=106 GT:DP 0/0:108
576 gi|15829254|ref|NC_002695.1| 227403 . G . 34.23 mq_score:50 AN=2;DP=108;MQ=5.44;MQ0=106 GT:DP 0/0:108
577 gi|15829254|ref|NC_002695.1| 227404 . A . 34.23 mq_score:50 AN=2;DP=108;MQ=5.44;MQ0=106 GT:DP 0/0:108
578 gi|15829254|ref|NC_002695.1| 227405 . T . 34.23 mq_score:50 AN=2;DP=108;MQ=5.44;MQ0=106 GT:DP 0/0:108
579 gi|15829254|ref|NC_002695.1| 227406 . G . 34.23 mq_score:50 AN=2;DP=108;MQ=5.44;MQ0=106 GT:DP 0/0:108
580 gi|15829254|ref|NC_002695.1| 227407 . A . 34.23 mq_score:50 AN=2;DP=104;MQ=5.55;MQ0=102 GT:DP 0/0:104
581 gi|15829254|ref|NC_002695.1| 227408 . C . 34.23 mq_score:50 AN=2;DP=104;MQ=5.55;MQ0=102 GT:DP 0/0:104
582 gi|15829254|ref|NC_002695.1| 227409 . C . 34.23 mq_score:50 AN=2;DP=101;MQ=5.63;MQ0=99 GT:DP 0/0:101
583 gi|15829254|ref|NC_002695.1| 227410 . A . 34.23 mq_score:50 AN=2;DP=100;MQ=5.66;MQ0=98 GT:DP 0/0:100
584 gi|15829254|ref|NC_002695.1| 227411 . G . 34.23 mq_score:50 AN=2;DP=101;MQ=5.63;MQ0=99 GT:DP 0/0:101
585 gi|15829254|ref|NC_002695.1| 227412 . C . 34.23 mq_score:50 AN=2;DP=101;MQ=5.63;MQ0=99 GT:DP 0/0:101
586 gi|15829254|ref|NC_002695.1| 227413 . C . 34.23 mq_score:50 AN=2;DP=101;MQ=5.63;MQ0=99 GT:DP 0/0:101
587 gi|15829254|ref|NC_002695.1| 227414 . A . 34.23 mq_score:50;min_depth:100 AN=2;DP=101;MQ=5.63;MQ0=99 GT:DP 0/0:98
588 gi|15829254|ref|NC_002695.1| 227415 . C . 34.23 mq_score:50 AN=2;DP=112;MQ=5.35;MQ0=110 GT:DP 0/0:112
589 gi|15829254|ref|NC_002695.1| 227416 . A . 34.23 mq_score:50 AN=2;DP=116;MQ=5.25;MQ0=114 GT:DP 0/0:116
590 gi|15829254|ref|NC_002695.1| 227417 . C . 34.23 mq_score:50 AN=2;DP=118;MQ=5.21;MQ0=116 GT:DP 0/0:118
591 gi|15829254|ref|NC_002695.1| 227418 . T . 34.23 mq_score:50 AN=2;DP=117;MQ=5.23;MQ0=115 GT:DP 0/0:117
592 gi|15829254|ref|NC_002695.1| 227419 . G . 34.23 mq_score:50 AN=2;DP=118;MQ=5.21;MQ0=116 GT:DP 0/0:118
593 gi|15829254|ref|NC_002695.1| 227420 . G . 34.23 mq_score:50 AN=2;DP=118;MQ=5.21;MQ0=116 GT:DP 0/0:118
594 gi|15829254|ref|NC_002695.1| 227421 . A . 34.23 mq_score:50 AN=2;DP=119;MQ=5.19;MQ0=117 GT:DP 0/0:119
595 gi|15829254|ref|NC_002695.1| 227422 . A . 34.23 mq_score:50 AN=2;DP=119;MQ=5.19;MQ0=117 GT:DP 0/0:119
596 gi|15829254|ref|NC_002695.1| 227423 . C . 34.23 mq_score:50 AN=2;DP=121;MQ=5.14;MQ0=119 GT:DP 0/0:121
597 gi|15829254|ref|NC_002695.1| 227424 . T . 34.23 mq_score:50 AN=2;DP=118;MQ=5.21;MQ0=116 GT:DP 0/0:118
598 gi|15829254|ref|NC_002695.1| 227425 . G . 34.23 mq_score:50 AN=2;DP=117;MQ=5.23;MQ0=115 GT:DP 0/0:117
599 gi|15829254|ref|NC_002695.1| 227426 . A . 34.23 mq_score:50 AN=2;DP=117;MQ=5.23;MQ0=115 GT:DP 0/0:117
600 gi|15829254|ref|NC_002695.1| 227427 . G . 34.23 mq_score:50 AN=2;DP=118;MQ=5.21;MQ0=116 GT:DP 0/0:118
601 gi|15829254|ref|NC_002695.1| 227428 . A . 34.23 mq_score:50 AN=2;DP=118;MQ=5.21;MQ0=116 GT:DP 0/0:118
602 gi|15829254|ref|NC_002695.1| 227429 . C . 34.23 mq_score:50 AN=2;DP=117;MQ=5.23;MQ0=115 GT:DP 0/0:117
603 gi|15829254|ref|NC_002695.1| 227430 . A . 34.23 mq_score:50 AN=2;DP=116;MQ=5.25;MQ0=114 GT:DP 0/0:116
604 gi|15829254|ref|NC_002695.1| 227431 . C . 34.23 mq_score:50 AN=2;DP=114;MQ=5.3;MQ0=112 GT:DP 0/0:114
605 gi|15829254|ref|NC_002695.1| 227432 . G . 34.23 mq_score:50 AN=2;DP=113;MQ=5.32;MQ0=111 GT:DP 0/0:113
606 gi|15829254|ref|NC_002695.1| 227433 . G . 34.23 mq_score:50 AN=2;DP=120;MQ=5.16;MQ0=118 GT:DP 0/0:120
607 gi|15829254|ref|NC_002695.1| 227434 . T . 34.23 mq_score:50 AN=2;DP=121;MQ=5.14;MQ0=119 GT:DP 0/0:121
608 gi|15829254|ref|NC_002695.1| 227435 . C . 34.23 mq_score:50 AN=2;DP=121;MQ=5.14;MQ0=119 GT:DP 0/0:121
609 gi|15829254|ref|NC_002695.1| 227436 . C . 34.23 mq_score:50 AN=2;DP=122;MQ=5.12;MQ0=120 GT:DP 0/0:122
610 gi|15829254|ref|NC_002695.1| 227437 . A . 34.23 mq_score:50 AN=2;DP=121;MQ=5.14;MQ0=119 GT:DP 0/0:121
611 gi|15829254|ref|NC_002695.1| 227438 . G . 34.23 mq_score:50 AN=2;DP=122;MQ=5.12;MQ0=120 GT:DP 0/0:122
612 gi|15829254|ref|NC_002695.1| 227439 . A . 34.23 mq_score:50 AN=2;DP=123;MQ=5.1;MQ0=121 GT:DP 0/0:121
613 gi|15829254|ref|NC_002695.1| 227440 . C . 34.23 mq_score:50 AN=2;DP=126;MQ=5.04;MQ0=124 GT:DP 0/0:126
614 gi|15829254|ref|NC_002695.1| 227441 . T . 34.23 mq_score:50 AN=2;DP=124;MQ=5.08;MQ0=122 GT:DP 0/0:124
615 gi|15829254|ref|NC_002695.1| 227442 . C . 31.24 mq_score:50 AN=2;DP=113;MQ=3.76;MQ0=112 GT:DP 0/0:113
616 gi|15829254|ref|NC_002695.1| 227443 . C . 31.24 mq_score:50 AN=2;DP=113;MQ=3.76;MQ0=112 GT:DP 0/0:113
617 gi|15829254|ref|NC_002695.1| 227444 . T . 31.23 mq_score:50 AN=2;DP=113;MQ=3.76;MQ0=112 GT:DP 0/0:113
618 gi|15829254|ref|NC_002695.1| 227445 . A . 31.23 mq_score:50 AN=2;DP=113;MQ=3.76;MQ0=112 GT:DP 0/0:110
619 gi|15829254|ref|NC_002695.1| 227446 . C . 31.23 mq_score:50 AN=2;DP=113;MQ=3.76;MQ0=112 GT:DP 0/0:113
620 gi|15829254|ref|NC_002695.1| 227447 . G . 31.23 mq_score:50 AN=2;DP=104;MQ=3.92;MQ0=103 GT:DP 0/0:104
621 gi|15829254|ref|NC_002695.1| 227448 . G . 31.23 mq_score:50 AN=2;DP=107;MQ=3.87;MQ0=106 GT:DP 0/0:107
622 gi|15829254|ref|NC_002695.1| 227449 . G . 31.23 mq_score:50 AN=2;DP=105;MQ=3.9;MQ0=104 GT:DP 0/0:105
623 gi|15829254|ref|NC_002695.1| 227450 . A . 31.23 mq_score:50 AN=2;DP=107;MQ=3.87;MQ0=106 GT:DP 0/0:107
624 gi|15829254|ref|NC_002695.1| 227451 . G . 31.23 mq_score:50 AN=2;DP=103;MQ=3.94;MQ0=102 GT:DP 0/0:103
625 gi|15829254|ref|NC_002695.1| 227452 . G . 31.23 mq_score:50 AN=2;DP=102;MQ=3.96;MQ0=101 GT:DP 0/0:101
626 gi|15829254|ref|NC_002695.1| 227453 . C . 31.23 mq_score:50 AN=2;DP=103;MQ=3.94;MQ0=102 GT:DP 0/0:103
627 gi|15829254|ref|NC_002695.1| 227454 . A . 31.23 mq_score:50 AN=2;DP=102;MQ=3.96;MQ0=101 GT:DP 0/0:102
628 gi|15829254|ref|NC_002695.1| 227455 . G . 31.23 mq_score:50 AN=2;DP=104;MQ=3.92;MQ0=103 GT:DP 0/0:104
629 gi|15829254|ref|NC_002695.1| 227456 . C . 31.23 mq_score:50 AN=2;DP=103;MQ=3.94;MQ0=102 GT:DP 0/0:103
630 gi|15829254|ref|NC_002695.1| 227457 . A . . mq_score:50 DP=102;MQ=0.0;MQ0=102 GT ./.
631 gi|15829254|ref|NC_002695.1| 227458 . G . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
632 gi|15829254|ref|NC_002695.1| 227459 . T . . mq_score:50 DP=101;MQ=0.0;MQ0=101 GT ./.
633 gi|15829254|ref|NC_002695.1| 227460 . G . . mq_score:50 DP=103;MQ=0.0;MQ0=103 GT ./.
634 gi|15829254|ref|NC_002695.1| 227461 . G . . mq_score:50 DP=103;MQ=0.0;MQ0=103 GT ./.
635 gi|15829254|ref|NC_002695.1| 227462 . G . . mq_score:50 DP=104;MQ=0.0;MQ0=104 GT ./.
636 gi|15829254|ref|NC_002695.1| 227463 . G . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
637 gi|15829254|ref|NC_002695.1| 227464 . A . . mq_score:50 DP=111;MQ=0.0;MQ0=111 GT ./.
638 gi|15829254|ref|NC_002695.1| 227465 . A . . mq_score:50 DP=118;MQ=0.0;MQ0=118 GT ./.
639 gi|15829254|ref|NC_002695.1| 227466 . T . . mq_score:50 DP=118;MQ=0.0;MQ0=118 GT ./.
640 gi|15829254|ref|NC_002695.1| 227467 . A . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
641 gi|15829254|ref|NC_002695.1| 227468 . T . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
642 gi|15829254|ref|NC_002695.1| 227469 . T . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
643 gi|15829254|ref|NC_002695.1| 227470 . G . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
644 gi|15829254|ref|NC_002695.1| 227471 . C . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
645 gi|15829254|ref|NC_002695.1| 227472 . A . . mq_score:50 DP=122;MQ=0.0;MQ0=122 GT ./.
646 gi|15829254|ref|NC_002695.1| 227473 . C . . mq_score:50 DP=124;MQ=0.0;MQ0=124 GT ./.
647 gi|15829254|ref|NC_002695.1| 227474 . A . . mq_score:50 DP=119;MQ=0.0;MQ0=119 GT ./.
648 gi|15829254|ref|NC_002695.1| 227475 . A . . mq_score:50 DP=119;MQ=0.0;MQ0=119 GT ./.
649 gi|15829254|ref|NC_002695.1| 227476 . T . . mq_score:50 DP=118;MQ=0.0;MQ0=118 GT ./.
650 gi|15829254|ref|NC_002695.1| 227477 . G . . mq_score:50 DP=118;MQ=0.0;MQ0=118 GT ./.
651 gi|15829254|ref|NC_002695.1| 227478 . G . . mq_score:50 DP=118;MQ=0.0;MQ0=118 GT ./.
652 gi|15829254|ref|NC_002695.1| 227479 . G . . mq_score:50 DP=118;MQ=0.0;MQ0=118 GT ./.
653 gi|15829254|ref|NC_002695.1| 227480 . C . . mq_score:50 DP=118;MQ=0.0;MQ0=118 GT ./.
654 gi|15829254|ref|NC_002695.1| 227481 . G . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
655 gi|15829254|ref|NC_002695.1| 227482 . C . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
656 gi|15829254|ref|NC_002695.1| 227483 . A . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
657 gi|15829254|ref|NC_002695.1| 227484 . A . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
658 gi|15829254|ref|NC_002695.1| 227485 . G . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
659 gi|15829254|ref|NC_002695.1| 227486 . C . . mq_score:50 DP=120;MQ=0.0;MQ0=120 GT ./.
660 gi|15829254|ref|NC_002695.1| 227487 . C . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
661 gi|15829254|ref|NC_002695.1| 227488 . T . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
662 gi|15829254|ref|NC_002695.1| 227489 . G . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
663 gi|15829254|ref|NC_002695.1| 227490 . A . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
664 gi|15829254|ref|NC_002695.1| 227491 . T . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
665 gi|15829254|ref|NC_002695.1| 227492 . G . . mq_score:50 DP=122;MQ=0.0;MQ0=122 GT ./.
666 gi|15829254|ref|NC_002695.1| 227493 . C . . mq_score:50 DP=122;MQ=0.0;MQ0=122 GT ./.
667 gi|15829254|ref|NC_002695.1| 227494 . A . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
668 gi|15829254|ref|NC_002695.1| 227495 . G . . mq_score:50 DP=124;MQ=0.0;MQ0=124 GT ./.
669 gi|15829254|ref|NC_002695.1| 227496 . C . . mq_score:50 DP=124;MQ=0.0;MQ0=124 GT ./.
670 gi|15829254|ref|NC_002695.1| 227497 . C . . mq_score:50 DP=125;MQ=0.0;MQ0=125 GT ./.
671 gi|15829254|ref|NC_002695.1| 227498 . A . . mq_score:50 DP=124;MQ=0.0;MQ0=124 GT ./.
672 gi|15829254|ref|NC_002695.1| 227499 . T . . mq_score:50 DP=127;MQ=0.0;MQ0=127 GT ./.
673 gi|15829254|ref|NC_002695.1| 227500 . G . . mq_score:50 DP=126;MQ=0.0;MQ0=126 GT ./.
674 gi|15829254|ref|NC_002695.1| 227501 . C . . mq_score:50 DP=126;MQ=0.0;MQ0=126 GT ./.
675 gi|15829254|ref|NC_002695.1| 227502 . C . . mq_score:50 DP=126;MQ=0.0;MQ0=126 GT ./.
676 gi|15829254|ref|NC_002695.1| 227503 . G . . mq_score:50 DP=126;MQ=0.0;MQ0=126 GT ./.
677 gi|15829254|ref|NC_002695.1| 227504 . C . . mq_score:50 DP=125;MQ=0.0;MQ0=125 GT ./.
678 gi|15829254|ref|NC_002695.1| 227505 . G . . mq_score:50 DP=126;MQ=0.0;MQ0=126 GT ./.
679 gi|15829254|ref|NC_002695.1| 227506 . T . . mq_score:50 DP=129;MQ=0.0;MQ0=129 GT ./.
680 gi|15829254|ref|NC_002695.1| 227507 . G . . mq_score:50 DP=132;MQ=0.0;MQ0=132 GT ./.
681 gi|15829254|ref|NC_002695.1| 227508 . T . . mq_score:50 DP=131;MQ=0.0;MQ0=131 GT ./.
682 gi|15829254|ref|NC_002695.1| 227509 . A . . mq_score:50 DP=131;MQ=0.0;MQ0=131 GT ./.
683 gi|15829254|ref|NC_002695.1| 227510 . T . . mq_score:50 DP=131;MQ=0.0;MQ0=131 GT ./.
684 gi|15829254|ref|NC_002695.1| 227511 . G . . mq_score:50 DP=128;MQ=0.0;MQ0=128 GT ./.
685 gi|15829254|ref|NC_002695.1| 227512 . A . . mq_score:50 DP=128;MQ=0.0;MQ0=128 GT ./.
686 gi|15829254|ref|NC_002695.1| 227513 . A . . mq_score:50 DP=130;MQ=0.0;MQ0=130 GT ./.
687 gi|15829254|ref|NC_002695.1| 227514 . G . . mq_score:50 DP=129;MQ=0.0;MQ0=129 GT ./.
688 gi|15829254|ref|NC_002695.1| 227515 . A . . mq_score:50 DP=130;MQ=0.0;MQ0=130 GT ./.
689 gi|15829254|ref|NC_002695.1| 227516 . A . . mq_score:50 DP=125;MQ=0.0;MQ0=125 GT ./.
690 gi|15829254|ref|NC_002695.1| 227517 . G . . mq_score:50 DP=124;MQ=0.0;MQ0=124 GT ./.
691 gi|15829254|ref|NC_002695.1| 227518 . G . . mq_score:50 DP=125;MQ=0.0;MQ0=125 GT ./.
692 gi|15829254|ref|NC_002695.1| 227519 . C . . mq_score:50 DP=124;MQ=0.0;MQ0=124 GT ./.
693 gi|15829254|ref|NC_002695.1| 227520 . C . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
694 gi|15829254|ref|NC_002695.1| 227521 . T . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
695 gi|15829254|ref|NC_002695.1| 227522 . T . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
696 gi|15829254|ref|NC_002695.1| 227523 . C . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
697 gi|15829254|ref|NC_002695.1| 227524 . G . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
698 gi|15829254|ref|NC_002695.1| 227525 . G . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
699 gi|15829254|ref|NC_002695.1| 227526 . G . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
700 gi|15829254|ref|NC_002695.1| 227527 . T . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
701 gi|15829254|ref|NC_002695.1| 227528 . T . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
702 gi|15829254|ref|NC_002695.1| 227529 . G . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
703 gi|15829254|ref|NC_002695.1| 227530 . T . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
704 gi|15829254|ref|NC_002695.1| 227531 . A . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
705 gi|15829254|ref|NC_002695.1| 227532 . A . . mq_score:50 DP=122;MQ=0.0;MQ0=122 GT ./.
706 gi|15829254|ref|NC_002695.1| 227533 . A . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
707 gi|15829254|ref|NC_002695.1| 227534 . G . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
708 gi|15829254|ref|NC_002695.1| 227535 . T . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
709 gi|15829254|ref|NC_002695.1| 227536 . A . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
710 gi|15829254|ref|NC_002695.1| 227537 . C . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
711 gi|15829254|ref|NC_002695.1| 227538 . T . . mq_score:50 DP=120;MQ=0.0;MQ0=120 GT ./.
712 gi|15829254|ref|NC_002695.1| 227539 . T . . mq_score:50 DP=120;MQ=0.0;MQ0=120 GT ./.
713 gi|15829254|ref|NC_002695.1| 227540 . T . . mq_score:50 DP=128;MQ=0.0;MQ0=128 GT ./.
714 gi|15829254|ref|NC_002695.1| 227541 . C . . mq_score:50 DP=129;MQ=0.0;MQ0=129 GT ./.
715 gi|15829254|ref|NC_002695.1| 227542 . A . . mq_score:50 DP=130;MQ=0.0;MQ0=130 GT ./.
716 gi|15829254|ref|NC_002695.1| 227543 . G . . mq_score:50 DP=129;MQ=0.0;MQ0=129 GT ./.
717 gi|15829254|ref|NC_002695.1| 227544 . C . . mq_score:50 DP=130;MQ=0.0;MQ0=130 GT ./.
718 gi|15829254|ref|NC_002695.1| 227545 . G . . mq_score:50 DP=130;MQ=0.0;MQ0=130 GT ./.
719 gi|15829254|ref|NC_002695.1| 227546 . G . . mq_score:50 DP=133;MQ=0.0;MQ0=133 GT ./.
720 gi|15829254|ref|NC_002695.1| 227547 . G . . mq_score:50 DP=133;MQ=0.0;MQ0=133 GT ./.
721 gi|15829254|ref|NC_002695.1| 227548 . G . . mq_score:50 DP=133;MQ=0.0;MQ0=133 GT ./.
722 gi|15829254|ref|NC_002695.1| 227549 . A . . mq_score:50 DP=133;MQ=0.0;MQ0=133 GT ./.
723 gi|15829254|ref|NC_002695.1| 227550 . G . . mq_score:50 DP=133;MQ=0.0;MQ0=133 GT ./.
724 gi|15829254|ref|NC_002695.1| 227551 . G . . mq_score:50 DP=133;MQ=0.0;MQ0=133 GT ./.
725 gi|15829254|ref|NC_002695.1| 227552 . A . . mq_score:50 DP=134;MQ=0.0;MQ0=134 GT ./.
726 gi|15829254|ref|NC_002695.1| 227553 . A . . mq_score:50 DP=135;MQ=0.0;MQ0=135 GT ./.
727 gi|15829254|ref|NC_002695.1| 227554 . G . . mq_score:50 DP=137;MQ=0.0;MQ0=137 GT ./.
728 gi|15829254|ref|NC_002695.1| 227555 . G . . mq_score:50 DP=137;MQ=0.0;MQ0=137 GT ./.
729 gi|15829254|ref|NC_002695.1| 227556 . G . . mq_score:50 DP=139;MQ=0.0;MQ0=139 GT ./.
730 gi|15829254|ref|NC_002695.1| 227557 . A . . mq_score:50 DP=137;MQ=0.0;MQ0=137 GT ./.
731 gi|15829254|ref|NC_002695.1| 227558 . G . . mq_score:50 DP=136;MQ=0.0;MQ0=136 GT ./.
732 gi|15829254|ref|NC_002695.1| 227559 . T . . mq_score:50 DP=136;MQ=0.0;MQ0=136 GT ./.
733 gi|15829254|ref|NC_002695.1| 227560 . A . . mq_score:50 DP=134;MQ=0.0;MQ0=134 GT ./.
734 gi|15829254|ref|NC_002695.1| 227561 . A . . mq_score:50 DP=134;MQ=0.0;MQ0=134 GT ./.
735 gi|15829254|ref|NC_002695.1| 227562 . A . . mq_score:50 DP=135;MQ=0.0;MQ0=135 GT ./.
736 gi|15829254|ref|NC_002695.1| 227563 . G . . mq_score:50 DP=143;MQ=0.0;MQ0=143 GT ./.
737 gi|15829254|ref|NC_002695.1| 227564 . T . . mq_score:50 DP=137;MQ=0.0;MQ0=137 GT ./.
738 gi|15829254|ref|NC_002695.1| 227565 . T . . mq_score:50 DP=130;MQ=0.0;MQ0=130 GT ./.
739 gi|15829254|ref|NC_002695.1| 227566 . A . . mq_score:50 DP=131;MQ=0.0;MQ0=131 GT ./.
740 gi|15829254|ref|NC_002695.1| 227567 . A . . mq_score:50 DP=130;MQ=0.0;MQ0=130 GT ./.
741 gi|15829254|ref|NC_002695.1| 227568 . T . . mq_score:50 DP=130;MQ=0.0;MQ0=130 GT ./.
742 gi|15829254|ref|NC_002695.1| 227569 . A . . mq_score:50 DP=128;MQ=0.0;MQ0=128 GT ./.
743 gi|15829254|ref|NC_002695.1| 227570 . C . . mq_score:50 DP=131;MQ=0.0;MQ0=131 GT ./.
744 gi|15829254|ref|NC_002695.1| 227571 . C . . mq_score:50 DP=124;MQ=0.0;MQ0=124 GT ./.
745 gi|15829254|ref|NC_002695.1| 227572 . T . . mq_score:50 DP=120;MQ=0.0;MQ0=120 GT ./.
746 gi|15829254|ref|NC_002695.1| 227573 . T . . mq_score:50 DP=120;MQ=0.0;MQ0=120 GT ./.
747 gi|15829254|ref|NC_002695.1| 227574 . T . . mq_score:50 DP=120;MQ=0.0;MQ0=120 GT ./.
748 gi|15829254|ref|NC_002695.1| 227575 . G . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
749 gi|15829254|ref|NC_002695.1| 227576 . C . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
750 gi|15829254|ref|NC_002695.1| 227577 . T . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
751 gi|15829254|ref|NC_002695.1| 227578 . C . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
752 gi|15829254|ref|NC_002695.1| 227579 . A . . mq_score:50 DP=121;MQ=0.0;MQ0=121 GT ./.
753 gi|15829254|ref|NC_002695.1| 227580 . T . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
754 gi|15829254|ref|NC_002695.1| 227581 . T . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
755 gi|15829254|ref|NC_002695.1| 227582 . G . . mq_score:50 DP=124;MQ=0.0;MQ0=124 GT ./.
756 gi|15829254|ref|NC_002695.1| 227583 . A . . mq_score:50 DP=123;MQ=0.0;MQ0=123 GT ./.
757 gi|15829254|ref|NC_002695.1| 227584 . C . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
758 gi|15829254|ref|NC_002695.1| 227585 . G . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
759 gi|15829254|ref|NC_002695.1| 227586 . T . . mq_score:50 DP=112;MQ=0.0;MQ0=112 GT ./.
760 gi|15829254|ref|NC_002695.1| 227587 . T . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
761 gi|15829254|ref|NC_002695.1| 227588 . A . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
762 gi|15829254|ref|NC_002695.1| 227589 . C . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
763 gi|15829254|ref|NC_002695.1| 227590 . C . . mq_score:50 DP=111;MQ=0.0;MQ0=111 GT ./.
764 gi|15829254|ref|NC_002695.1| 227591 . C . . mq_score:50 DP=111;MQ=0.0;MQ0=111 GT ./.
765 gi|15829254|ref|NC_002695.1| 227592 . G . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
766 gi|15829254|ref|NC_002695.1| 227593 . C . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
767 gi|15829254|ref|NC_002695.1| 227594 . A . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
768 gi|15829254|ref|NC_002695.1| 227595 . G . . mq_score:50 DP=108;MQ=0.0;MQ0=108 GT ./.
769 gi|15829254|ref|NC_002695.1| 227596 . A . . mq_score:50 DP=108;MQ=0.0;MQ0=108 GT ./.
770 gi|15829254|ref|NC_002695.1| 227597 . A . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
771 gi|15829254|ref|NC_002695.1| 227598 . G . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
772 gi|15829254|ref|NC_002695.1| 227599 . A . . mq_score:50 DP=103;MQ=0.0;MQ0=103 GT ./.
773 gi|15829254|ref|NC_002695.1| 227600 . A . . mq_score:50 DP=103;MQ=0.0;MQ0=103 GT ./.
774 gi|15829254|ref|NC_002695.1| 227601 . G . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
775 gi|15829254|ref|NC_002695.1| 227602 . C . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
776 gi|15829254|ref|NC_002695.1| 227603 . A . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
777 gi|15829254|ref|NC_002695.1| 227604 . C . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
778 gi|15829254|ref|NC_002695.1| 227605 . C . . mq_score:50 DP=102;MQ=0.0;MQ0=102 GT ./.
779 gi|15829254|ref|NC_002695.1| 227606 . G . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
780 gi|15829254|ref|NC_002695.1| 227607 . G . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
781 gi|15829254|ref|NC_002695.1| 227608 . C . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
782 gi|15829254|ref|NC_002695.1| 227609 . T . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
783 gi|15829254|ref|NC_002695.1| 227610 . A . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
784 gi|15829254|ref|NC_002695.1| 227611 . A . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
785 gi|15829254|ref|NC_002695.1| 227612 . C . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
786 gi|15829254|ref|NC_002695.1| 227613 . T . . mq_score:50 DP=108;MQ=0.0;MQ0=108 GT ./.
787 gi|15829254|ref|NC_002695.1| 227614 . C . . mq_score:50 DP=108;MQ=0.0;MQ0=108 GT ./.
788 gi|15829254|ref|NC_002695.1| 227615 . C . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
789 gi|15829254|ref|NC_002695.1| 227616 . G . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
790 gi|15829254|ref|NC_002695.1| 227617 . T . . mq_score:50;min_depth:100 DP=98;MQ=0.0;MQ0=98 GT ./.
791 gi|15829254|ref|NC_002695.1| 227618 . G . . mq_score:50;min_depth:100 DP=97;MQ=0.0;MQ0=97 GT ./.
792 gi|15829254|ref|NC_002695.1| 227619 . C . . mq_score:50;min_depth:100 DP=96;MQ=0.0;MQ0=96 GT ./.
793 gi|15829254|ref|NC_002695.1| 227620 . C . . mq_score:50;min_depth:100 DP=96;MQ=0.0;MQ0=96 GT ./.
794 gi|15829254|ref|NC_002695.1| 227621 . A . . mq_score:50;min_depth:100 DP=95;MQ=0.0;MQ0=95 GT ./.
795 gi|15829254|ref|NC_002695.1| 227622 . G . . mq_score:50;min_depth:100 DP=95;MQ=0.0;MQ0=95 GT ./.
796 gi|15829254|ref|NC_002695.1| 227623 . C . . mq_score:50;min_depth:100 DP=95;MQ=0.0;MQ0=95 GT ./.
797 gi|15829254|ref|NC_002695.1| 227624 . A . . mq_score:50;min_depth:100 DP=95;MQ=0.0;MQ0=95 GT ./.
798 gi|15829254|ref|NC_002695.1| 227625 . G . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
799 gi|15829254|ref|NC_002695.1| 227626 . C . . mq_score:50;min_depth:100 DP=96;MQ=0.0;MQ0=96 GT ./.
800 gi|15829254|ref|NC_002695.1| 227627 . C . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
801 gi|15829254|ref|NC_002695.1| 227628 . G . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
802 gi|15829254|ref|NC_002695.1| 227629 . C . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
803 gi|15829254|ref|NC_002695.1| 227630 . G . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
804 gi|15829254|ref|NC_002695.1| 227631 . G . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
805 gi|15829254|ref|NC_002695.1| 227632 . T . . mq_score:50 DP=107;MQ=0.0;MQ0=107 GT ./.
806 gi|15829254|ref|NC_002695.1| 227633 . A . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
807 gi|15829254|ref|NC_002695.1| 227634 . A . . mq_score:50 DP=114;MQ=0.0;MQ0=114 GT ./.
808 gi|15829254|ref|NC_002695.1| 227635 . T . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
809 gi|15829254|ref|NC_002695.1| 227636 . A . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
810 gi|15829254|ref|NC_002695.1| 227637 . C . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
811 gi|15829254|ref|NC_002695.1| 227638 . G . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
812 gi|15829254|ref|NC_002695.1| 227639 . G . . mq_score:50 DP=108;MQ=0.0;MQ0=108 GT ./.
813 gi|15829254|ref|NC_002695.1| 227640 . A . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
814 gi|15829254|ref|NC_002695.1| 227641 . G . . mq_score:50 DP=101;MQ=0.0;MQ0=101 GT ./.
815 gi|15829254|ref|NC_002695.1| 227642 . G . . mq_score:50;min_depth:100 DP=97;MQ=0.0;MQ0=97 GT ./.
816 gi|15829254|ref|NC_002695.1| 227643 . G . . mq_score:50 DP=101;MQ=0.0;MQ0=101 GT ./.
817 gi|15829254|ref|NC_002695.1| 227644 . T . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
818 gi|15829254|ref|NC_002695.1| 227645 . G . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
819 gi|15829254|ref|NC_002695.1| 227646 . C . . mq_score:50;min_depth:100 DP=98;MQ=0.0;MQ0=98 GT ./.
820 gi|15829254|ref|NC_002695.1| 227647 . A . . mq_score:50;min_depth:100 DP=98;MQ=0.0;MQ0=98 GT ./.
821 gi|15829254|ref|NC_002695.1| 227648 . A . . mq_score:50;min_depth:100 DP=96;MQ=0.0;MQ0=96 GT ./.
822 gi|15829254|ref|NC_002695.1| 227649 . G . . mq_score:50;min_depth:100 DP=97;MQ=0.0;MQ0=97 GT ./.
823 gi|15829254|ref|NC_002695.1| 227650 . C . . mq_score:50;min_depth:100 DP=95;MQ=0.0;MQ0=95 GT ./.
824 gi|15829254|ref|NC_002695.1| 227651 . G . . mq_score:50;min_depth:100 DP=96;MQ=0.0;MQ0=96 GT ./.
825 gi|15829254|ref|NC_002695.1| 227652 . T . . mq_score:50;min_depth:100 DP=93;MQ=0.0;MQ0=93 GT ./.
826 gi|15829254|ref|NC_002695.1| 227653 . T . . mq_score:50;min_depth:100 DP=93;MQ=0.0;MQ0=93 GT ./.
827 gi|15829254|ref|NC_002695.1| 227654 . A . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
828 gi|15829254|ref|NC_002695.1| 227655 . A . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
829 gi|15829254|ref|NC_002695.1| 227656 . T . . mq_score:50;min_depth:100 DP=92;MQ=0.0;MQ0=92 GT ./.
830 gi|15829254|ref|NC_002695.1| 227657 . C . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
831 gi|15829254|ref|NC_002695.1| 227658 . G . . mq_score:50;min_depth:100 DP=92;MQ=0.0;MQ0=92 GT ./.
832 gi|15829254|ref|NC_002695.1| 227659 . G . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
833 gi|15829254|ref|NC_002695.1| 227660 . A . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
834 gi|15829254|ref|NC_002695.1| 227661 . A . . mq_score:50;min_depth:100 DP=96;MQ=0.0;MQ0=96 GT ./.
835 gi|15829254|ref|NC_002695.1| 227662 . T . . mq_score:50;min_depth:100 DP=93;MQ=0.0;MQ0=93 GT ./.
836 gi|15829254|ref|NC_002695.1| 227663 . T . . mq_score:50;min_depth:100 DP=86;MQ=0.0;MQ0=86 GT ./.
837 gi|15829254|ref|NC_002695.1| 227664 . A . . mq_score:50;min_depth:100 DP=87;MQ=0.0;MQ0=87 GT ./.
838 gi|15829254|ref|NC_002695.1| 227665 . C . . mq_score:50;min_depth:100 DP=87;MQ=0.0;MQ0=87 GT ./.
839 gi|15829254|ref|NC_002695.1| 227666 . T . . mq_score:50;min_depth:100 DP=90;MQ=0.0;MQ0=90 GT ./.
840 gi|15829254|ref|NC_002695.1| 227667 . G . . mq_score:50;min_depth:100 DP=90;MQ=0.0;MQ0=90 GT ./.
841 gi|15829254|ref|NC_002695.1| 227668 . G . . mq_score:50;min_depth:100 DP=93;MQ=0.0;MQ0=93 GT ./.
842 gi|15829254|ref|NC_002695.1| 227669 . G . . mq_score:50;min_depth:100 DP=95;MQ=0.0;MQ0=95 GT ./.
843 gi|15829254|ref|NC_002695.1| 227670 . C . . mq_score:50;min_depth:100 DP=96;MQ=0.0;MQ0=96 GT ./.
844 gi|15829254|ref|NC_002695.1| 227671 . G . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
845 gi|15829254|ref|NC_002695.1| 227672 . T . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
846 gi|15829254|ref|NC_002695.1| 227673 . A . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
847 gi|15829254|ref|NC_002695.1| 227674 . A . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
848 gi|15829254|ref|NC_002695.1| 227675 . A . . mq_score:50;min_depth:100 DP=97;MQ=0.0;MQ0=97 GT ./.
849 gi|15829254|ref|NC_002695.1| 227676 . G . . mq_score:50 DP=101;MQ=0.0;MQ0=101 GT ./.
850 gi|15829254|ref|NC_002695.1| 227677 . C . . mq_score:50 DP=101;MQ=0.0;MQ0=101 GT ./.
851 gi|15829254|ref|NC_002695.1| 227678 . G . . mq_score:50 DP=102;MQ=0.0;MQ0=102 GT ./.
852 gi|15829254|ref|NC_002695.1| 227679 . C . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
853 gi|15829254|ref|NC_002695.1| 227680 . A . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
854 gi|15829254|ref|NC_002695.1| 227681 . C . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
855 gi|15829254|ref|NC_002695.1| 227682 . G . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
856 gi|15829254|ref|NC_002695.1| 227683 . C . . mq_score:50 DP=107;MQ=0.0;MQ0=107 GT ./.
857 gi|15829254|ref|NC_002695.1| 227684 . A . . mq_score:50 DP=107;MQ=0.0;MQ0=107 GT ./.
858 gi|15829254|ref|NC_002695.1| 227685 . G . . mq_score:50 DP=108;MQ=0.0;MQ0=108 GT ./.
859 gi|15829254|ref|NC_002695.1| 227686 . G . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
860 gi|15829254|ref|NC_002695.1| 227687 . C . . mq_score:50 DP=112;MQ=0.0;MQ0=112 GT ./.
861 gi|15829254|ref|NC_002695.1| 227688 . G . . mq_score:50 DP=112;MQ=0.0;MQ0=112 GT ./.
862 gi|15829254|ref|NC_002695.1| 227689 . G . . mq_score:50 DP=113;MQ=0.0;MQ0=113 GT ./.
863 gi|15829254|ref|NC_002695.1| 227690 . T . . mq_score:50 DP=112;MQ=0.0;MQ0=112 GT ./.
864 gi|15829254|ref|NC_002695.1| 227691 . T . . mq_score:50 DP=113;MQ=0.0;MQ0=113 GT ./.
865 gi|15829254|ref|NC_002695.1| 227692 . T . . mq_score:50 DP=113;MQ=0.0;MQ0=113 GT ./.
866 gi|15829254|ref|NC_002695.1| 227693 . G . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
867 gi|15829254|ref|NC_002695.1| 227694 . T . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
868 gi|15829254|ref|NC_002695.1| 227695 . T . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
869 gi|15829254|ref|NC_002695.1| 227696 . A . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
870 gi|15829254|ref|NC_002695.1| 227697 . A . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
871 gi|15829254|ref|NC_002695.1| 227698 . G . . mq_score:50 DP=118;MQ=0.0;MQ0=118 GT ./.
872 gi|15829254|ref|NC_002695.1| 227699 . T . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
873 gi|15829254|ref|NC_002695.1| 227700 . C . . mq_score:50 DP=118;MQ=0.0;MQ0=118 GT ./.
874 gi|15829254|ref|NC_002695.1| 227701 . A . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
875 gi|15829254|ref|NC_002695.1| 227702 . G . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
876 gi|15829254|ref|NC_002695.1| 227703 . A . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
877 gi|15829254|ref|NC_002695.1| 227704 . T . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
878 gi|15829254|ref|NC_002695.1| 227705 . G . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
879 gi|15829254|ref|NC_002695.1| 227706 . T . . mq_score:50 DP=111;MQ=0.0;MQ0=111 GT ./.
880 gi|15829254|ref|NC_002695.1| 227707 . G . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
881 gi|15829254|ref|NC_002695.1| 227708 . A . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
882 gi|15829254|ref|NC_002695.1| 227709 . A . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
883 gi|15829254|ref|NC_002695.1| 227710 . A . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
884 gi|15829254|ref|NC_002695.1| 227711 . T . . mq_score:50 DP=114;MQ=0.0;MQ0=114 GT ./.
885 gi|15829254|ref|NC_002695.1| 227712 . C . . mq_score:50 DP=116;MQ=0.0;MQ0=116 GT ./.
886 gi|15829254|ref|NC_002695.1| 227713 . C . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
887 gi|15829254|ref|NC_002695.1| 227714 . C . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
888 gi|15829254|ref|NC_002695.1| 227715 . C . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
889 gi|15829254|ref|NC_002695.1| 227716 . G . . mq_score:50 DP=119;MQ=0.0;MQ0=119 GT ./.
890 gi|15829254|ref|NC_002695.1| 227717 . G . . mq_score:50 DP=120;MQ=0.0;MQ0=120 GT ./.
891 gi|15829254|ref|NC_002695.1| 227718 . G . . mq_score:50 DP=120;MQ=0.0;MQ0=120 GT ./.
892 gi|15829254|ref|NC_002695.1| 227719 . C . . mq_score:50 DP=120;MQ=0.0;MQ0=120 GT ./.
893 gi|15829254|ref|NC_002695.1| 227720 . T . . mq_score:50 DP=120;MQ=0.0;MQ0=120 GT ./.
894 gi|15829254|ref|NC_002695.1| 227721 . C . . mq_score:50 DP=127;MQ=0.0;MQ0=127 GT ./.
895 gi|15829254|ref|NC_002695.1| 227722 . A . . mq_score:50 DP=129;MQ=0.0;MQ0=129 GT ./.
896 gi|15829254|ref|NC_002695.1| 227723 . A . . mq_score:50 DP=131;MQ=0.0;MQ0=131 GT ./.
897 gi|15829254|ref|NC_002695.1| 227724 . C . . mq_score:50 DP=132;MQ=0.0;MQ0=132 GT ./.
898 gi|15829254|ref|NC_002695.1| 227725 . C . . mq_score:50 DP=131;MQ=0.0;MQ0=131 GT ./.
899 gi|15829254|ref|NC_002695.1| 227726 . T . . mq_score:50 DP=129;MQ=0.0;MQ0=129 GT ./.
900 gi|15829254|ref|NC_002695.1| 227727 . G . . mq_score:50 DP=129;MQ=0.0;MQ0=129 GT ./.
901 gi|15829254|ref|NC_002695.1| 227728 . G . . mq_score:50 DP=129;MQ=0.0;MQ0=129 GT ./.
902 gi|15829254|ref|NC_002695.1| 227729 . G . . mq_score:50 DP=122;MQ=0.0;MQ0=122 GT ./.
903 gi|15829254|ref|NC_002695.1| 227730 . A . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
904 gi|15829254|ref|NC_002695.1| 227731 . A . . mq_score:50 DP=115;MQ=0.0;MQ0=115 GT ./.
905 gi|15829254|ref|NC_002695.1| 227732 . C . . mq_score:50 DP=117;MQ=0.0;MQ0=117 GT ./.
906 gi|15829254|ref|NC_002695.1| 227733 . T . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
907 gi|15829254|ref|NC_002695.1| 227734 . G . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
908 gi|15829254|ref|NC_002695.1| 227735 . C . . mq_score:50 DP=111;MQ=0.0;MQ0=111 GT ./.
909 gi|15829254|ref|NC_002695.1| 227736 . A . . mq_score:50 DP=114;MQ=0.0;MQ0=114 GT ./.
910 gi|15829254|ref|NC_002695.1| 227737 . T . . mq_score:50 DP=114;MQ=0.0;MQ0=114 GT ./.
911 gi|15829254|ref|NC_002695.1| 227738 . C . . mq_score:50 DP=112;MQ=0.0;MQ0=112 GT ./.
912 gi|15829254|ref|NC_002695.1| 227739 . T . . mq_score:50 DP=112;MQ=0.0;MQ0=112 GT ./.
913 gi|15829254|ref|NC_002695.1| 227740 . G . . mq_score:50 DP=113;MQ=0.0;MQ0=113 GT ./.
914 gi|15829254|ref|NC_002695.1| 227741 . A . . mq_score:50 DP=111;MQ=0.0;MQ0=111 GT ./.
915 gi|15829254|ref|NC_002695.1| 227742 . T . . mq_score:50 DP=111;MQ=0.0;MQ0=111 GT ./.
916 gi|15829254|ref|NC_002695.1| 227743 . A . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
917 gi|15829254|ref|NC_002695.1| 227744 . C . . mq_score:50 DP=107;MQ=0.0;MQ0=107 GT ./.
918 gi|15829254|ref|NC_002695.1| 227745 . T . . mq_score:50 DP=107;MQ=0.0;MQ0=107 GT ./.
919 gi|15829254|ref|NC_002695.1| 227746 . G . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
920 gi|15829254|ref|NC_002695.1| 227747 . G . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
921 gi|15829254|ref|NC_002695.1| 227748 . C . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
922 gi|15829254|ref|NC_002695.1| 227749 . A . . mq_score:50 DP=108;MQ=0.0;MQ0=108 GT ./.
923 gi|15829254|ref|NC_002695.1| 227750 . A . . mq_score:50 DP=107;MQ=0.0;MQ0=107 GT ./.
924 gi|15829254|ref|NC_002695.1| 227751 . G . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
925 gi|15829254|ref|NC_002695.1| 227752 . C . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
926 gi|15829254|ref|NC_002695.1| 227753 . T . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
927 gi|15829254|ref|NC_002695.1| 227754 . T . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
928 gi|15829254|ref|NC_002695.1| 227755 . G . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
929 gi|15829254|ref|NC_002695.1| 227756 . A . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
930 gi|15829254|ref|NC_002695.1| 227757 . G . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
931 gi|15829254|ref|NC_002695.1| 227758 . T . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
932 gi|15829254|ref|NC_002695.1| 227759 . C . . mq_score:50 DP=112;MQ=0.0;MQ0=112 GT ./.
933 gi|15829254|ref|NC_002695.1| 227760 . T . . mq_score:50 DP=113;MQ=0.0;MQ0=113 GT ./.
934 gi|15829254|ref|NC_002695.1| 227761 . C . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
935 gi|15829254|ref|NC_002695.1| 227762 . G . . mq_score:50 DP=110;MQ=0.0;MQ0=110 GT ./.
936 gi|15829254|ref|NC_002695.1| 227763 . T . . mq_score:50 DP=111;MQ=0.0;MQ0=111 GT ./.
937 gi|15829254|ref|NC_002695.1| 227764 . A . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
938 gi|15829254|ref|NC_002695.1| 227765 . G . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
939 gi|15829254|ref|NC_002695.1| 227766 . A . . mq_score:50 DP=103;MQ=0.0;MQ0=103 GT ./.
940 gi|15829254|ref|NC_002695.1| 227767 . G . . mq_score:50 DP=104;MQ=0.0;MQ0=104 GT ./.
941 gi|15829254|ref|NC_002695.1| 227768 . G . . mq_score:50 DP=102;MQ=0.0;MQ0=102 GT ./.
942 gi|15829254|ref|NC_002695.1| 227769 . G . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
943 gi|15829254|ref|NC_002695.1| 227770 . G . . mq_score:50 DP=101;MQ=0.0;MQ0=101 GT ./.
944 gi|15829254|ref|NC_002695.1| 227771 . G . . mq_score:50 DP=100;MQ=0.0;MQ0=100 GT ./.
945 gi|15829254|ref|NC_002695.1| 227772 . G . . mq_score:50 DP=100;MQ=0.0;MQ0=100 GT ./.
946 gi|15829254|ref|NC_002695.1| 227773 . T . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
947 gi|15829254|ref|NC_002695.1| 227774 . A . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
948 gi|15829254|ref|NC_002695.1| 227775 . G . . mq_score:50 DP=101;MQ=0.0;MQ0=101 GT ./.
949 gi|15829254|ref|NC_002695.1| 227776 . A . . mq_score:50 DP=100;MQ=0.0;MQ0=100 GT ./.
950 gi|15829254|ref|NC_002695.1| 227777 . A . . mq_score:50 DP=101;MQ=0.0;MQ0=101 GT ./.
951 gi|15829254|ref|NC_002695.1| 227778 . T . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
952 gi|15829254|ref|NC_002695.1| 227779 . T . . mq_score:50;min_depth:100 DP=95;MQ=0.0;MQ0=95 GT ./.
953 gi|15829254|ref|NC_002695.1| 227780 . C . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
954 gi|15829254|ref|NC_002695.1| 227781 . C . . mq_score:50;min_depth:100 DP=92;MQ=0.0;MQ0=92 GT ./.
955 gi|15829254|ref|NC_002695.1| 227782 . A . . mq_score:50;min_depth:100 DP=92;MQ=0.0;MQ0=92 GT ./.
956 gi|15829254|ref|NC_002695.1| 227783 . G . . mq_score:50;min_depth:100 DP=91;MQ=0.0;MQ0=91 GT ./.
957 gi|15829254|ref|NC_002695.1| 227784 . G . . mq_score:50;min_depth:100 DP=91;MQ=0.0;MQ0=91 GT ./.
958 gi|15829254|ref|NC_002695.1| 227785 . T . . mq_score:50;min_depth:100 DP=91;MQ=0.0;MQ0=91 GT ./.
959 gi|15829254|ref|NC_002695.1| 227786 . G . . mq_score:50;min_depth:100 DP=90;MQ=0.0;MQ0=90 GT ./.
960 gi|15829254|ref|NC_002695.1| 227787 . T . . mq_score:50;min_depth:100 DP=87;MQ=0.0;MQ0=87 GT ./.
961 gi|15829254|ref|NC_002695.1| 227788 . A . . mq_score:50;min_depth:100 DP=87;MQ=0.0;MQ0=87 GT ./.
962 gi|15829254|ref|NC_002695.1| 227789 . G . . mq_score:50;min_depth:100 DP=88;MQ=0.0;MQ0=88 GT ./.
963 gi|15829254|ref|NC_002695.1| 227790 . C . . mq_score:50;min_depth:100 DP=87;MQ=0.0;MQ0=87 GT ./.
964 gi|15829254|ref|NC_002695.1| 227791 . G . . mq_score:50;min_depth:100 DP=87;MQ=0.0;MQ0=87 GT ./.
965 gi|15829254|ref|NC_002695.1| 227792 . G . . mq_score:50;min_depth:100 DP=87;MQ=0.0;MQ0=87 GT ./.
966 gi|15829254|ref|NC_002695.1| 227793 . T . . mq_score:50;min_depth:100 DP=84;MQ=0.0;MQ0=84 GT ./.
967 gi|15829254|ref|NC_002695.1| 227794 . G . . mq_score:50;min_depth:100 DP=84;MQ=0.0;MQ0=84 GT ./.
968 gi|15829254|ref|NC_002695.1| 227795 . A . . mq_score:50;min_depth:100 DP=89;MQ=0.0;MQ0=89 GT ./.
969 gi|15829254|ref|NC_002695.1| 227796 . A . . mq_score:50;min_depth:100 DP=89;MQ=0.0;MQ0=89 GT ./.
970 gi|15829254|ref|NC_002695.1| 227797 . A . . mq_score:50;min_depth:100 DP=92;MQ=0.0;MQ0=92 GT ./.
971 gi|15829254|ref|NC_002695.1| 227798 . T . . mq_score:50;min_depth:100 DP=89;MQ=0.0;MQ0=89 GT ./.
972 gi|15829254|ref|NC_002695.1| 227799 . G . . mq_score:50;min_depth:100 DP=93;MQ=0.0;MQ0=93 GT ./.
973 gi|15829254|ref|NC_002695.1| 227800 . C . . mq_score:50;min_depth:100 DP=93;MQ=0.0;MQ0=93 GT ./.
974 gi|15829254|ref|NC_002695.1| 227801 . G . . mq_score:50;min_depth:100 DP=92;MQ=0.0;MQ0=92 GT ./.
975 gi|15829254|ref|NC_002695.1| 227802 . T . . mq_score:50;min_depth:100 DP=91;MQ=0.0;MQ0=91 GT ./.
976 gi|15829254|ref|NC_002695.1| 227803 . A . . mq_score:50;min_depth:100 DP=92;MQ=0.0;MQ0=92 GT ./.
977 gi|15829254|ref|NC_002695.1| 227804 . G . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
978 gi|15829254|ref|NC_002695.1| 227805 . A . . mq_score:50;min_depth:100 DP=96;MQ=0.0;MQ0=96 GT ./.
979 gi|15829254|ref|NC_002695.1| 227806 . G . . mq_score:50 DP=104;MQ=0.0;MQ0=104 GT ./.
980 gi|15829254|ref|NC_002695.1| 227807 . A . . mq_score:50 DP=109;MQ=0.0;MQ0=109 GT ./.
981 gi|15829254|ref|NC_002695.1| 227808 . T . . mq_score:50 DP=104;MQ=0.0;MQ0=104 GT ./.
982 gi|15829254|ref|NC_002695.1| 227809 . C . . mq_score:50 DP=104;MQ=0.0;MQ0=104 GT ./.
983 gi|15829254|ref|NC_002695.1| 227810 . T . . mq_score:50 DP=103;MQ=0.0;MQ0=103 GT ./.
984 gi|15829254|ref|NC_002695.1| 227811 . G . . mq_score:50 DP=104;MQ=0.0;MQ0=104 GT ./.
985 gi|15829254|ref|NC_002695.1| 227812 . G . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
986 gi|15829254|ref|NC_002695.1| 227813 . A . . mq_score:50 DP=105;MQ=0.0;MQ0=105 GT ./.
987 gi|15829254|ref|NC_002695.1| 227814 . G . . mq_score:50 DP=104;MQ=0.0;MQ0=104 GT ./.
988 gi|15829254|ref|NC_002695.1| 227815 . G . . mq_score:50 DP=106;MQ=0.0;MQ0=106 GT ./.
989 gi|15829254|ref|NC_002695.1| 227816 . A . . mq_score:50 DP=102;MQ=0.0;MQ0=102 GT ./.
990 gi|15829254|ref|NC_002695.1| 227817 . A . . mq_score:50 DP=102;MQ=0.0;MQ0=102 GT ./.
991 gi|15829254|ref|NC_002695.1| 227818 . T . . mq_score:50 DP=103;MQ=0.0;MQ0=103 GT ./.
992 gi|15829254|ref|NC_002695.1| 227819 . A . . mq_score:50 DP=103;MQ=0.0;MQ0=103 GT ./.
993 gi|15829254|ref|NC_002695.1| 227820 . C . . mq_score:50 DP=104;MQ=0.0;MQ0=104 GT ./.
994 gi|15829254|ref|NC_002695.1| 227821 . C . . mq_score:50;min_depth:100 DP=97;MQ=0.0;MQ0=97 GT ./.
995 gi|15829254|ref|NC_002695.1| 227822 . G . . mq_score:50;min_depth:100 DP=99;MQ=0.0;MQ0=99 GT ./.
996 gi|15829254|ref|NC_002695.1| 227823 . G . . mq_score:50;min_depth:100 DP=97;MQ=0.0;MQ0=97 GT ./.
997 gi|15829254|ref|NC_002695.1| 227824 . T . . mq_score:50;min_depth:100 DP=95;MQ=0.0;MQ0=95 GT ./.
998 gi|15829254|ref|NC_002695.1| 227825 . G . . mq_score:50;min_depth:100 DP=95;MQ=0.0;MQ0=95 GT ./.
999 gi|15829254|ref|NC_002695.1| 227826 . G . . mq_score:50;min_depth:100 DP=95;MQ=0.0;MQ0=95 GT ./.
1000 gi|15829254|ref|NC_002695.1| 227827 . C . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.
1001 gi|15829254|ref|NC_002695.1| 227828 . G . . mq_score:50;min_depth:100 DP=94;MQ=0.0;MQ0=94 GT ./.