Mercurial > repos > vandelj > giant_gsea_format

diff src/utils.R @ 2:738ed1deed23 draft default tip

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"planemo upload for repository https://github.com/juliechevalier/GIANT/tree/master commit 89b7d0e8812f53222691cffe29bd48be6519829d"
author vandelj
date Fri, 25 Sep 2020 08:51:31 +0000
parents 3022feec50fe
children
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--- a/src/utils.R	Wed Sep 09 10:36:26 2020 +0000
+++ b/src/utils.R	Fri Sep 25 08:51:31 2020 +0000
@@ -18,7 +18,7 @@
 distExtended <- function(x,method) {
   if(method %in% c("euclidean", "maximum", "manhattan", "canberra", "binary", "minkowski"))return(dist(x,method = method))
   if(method %in% c("pearson", "spearman", "kendall"))return(as.dist(1-cor(t(x),method=method))/2)
-  if(method %in% c("absPearson", "absSpearman", "absKendall"))return(as.dist(1-abs(cor(t(x),method=method))))
+  if(method %in% c("absPearson", "absSpearman", "absKendall"))return(as.dist(1-abs(cor(t(x),method=tolower(substr(method,4,15))))))
   return(NULL)
 }