Mercurial > repos > vimalkumarvelayudhan > riboplot
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| author | Vimalkumar Velayudhan <vimal@biotechcoder.com> |
|---|---|
| date | Thu, 27 Aug 2015 13:03:28 +0100 |
| parents | 628f82e72d72 |
| children |
| rev | line source |
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| 3 | 1 ============ |
| 2 Installation | |
| 3 ============ | |
| 4 At the command line:: | |
| 5 | |
| 6 $ easy_install riboplot | |
| 7 | |
| 8 Or, if you have virtualenvwrapper installed:: | |
| 9 | |
| 10 $ mkvirtualenv riboplot | |
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Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
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11 $ pip install riboplot |
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628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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12 |
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Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
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13 .. note:: |
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Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
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628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
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15 RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. |
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628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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16 |
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628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
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17 This release of riboplot has been tested with bedtools version ``2.17.0``. |
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628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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18 |
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628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
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19 On Ubuntu and derivatives, bedtools can be installed from the repositories using:: |
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628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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20 |
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628f82e72d72
Version as released on PyPI 0.1.0
Vimalkumar Velayudhan <vimal@biotechcoder.com>
parents:
3
diff
changeset
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21 sudo apt-get install bedtools |
