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Working install (virtualenv)
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Wed, 02 Sep 2015 14:25:18 +0100
parents cff63cf0dea8
children fb64b970da25
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27:99dda3e39997 28:60bbd8ebe314
25 25
26 Documentation: https://riboplot.readthedocs.org 26 Documentation: https://riboplot.readthedocs.org
27 27
28 Repository: https://github.com/vimalkumarvelayudhan/riboplot 28 Repository: https://github.com/vimalkumarvelayudhan/riboplot
29 29
30 Requirements
31 ------------
32 Python packages
33 ...............
34 * matplotlib ``1.3.1``
35 * pysam ``0.8.3``
36 30
37 If you have a virtualenv setup, these packages and their dependencies can be installed 31 .. note::
38 using::
39
40 pip install matplotlib==1.3.1
41 pip install pysam==0.8.3
42 32
43 Bedtools 33 RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed.
44 ........
45 RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed.
46
47 This release of riboplot has been tested with bedtools version ``2.17.0``.
48 34
49 On Ubuntu and derivatives, bedtools can be installed from the repositories using:: 35 This release of riboplot has been tested with bedtools version ``2.17.0``.
50 36
51 sudo apt-get install bedtools 37 On Ubuntu and derivatives, bedtools can be installed from the repositories using::
52 38
39 sudo apt-get install bedtools
40