Mercurial > repos > vimalkumarvelayudhan > riboplot
comparison docs/installation.rst @ 14:628f82e72d72
Version as released on PyPI 0.1.0
| author | Vimalkumar Velayudhan <vimal@biotechcoder.com> |
|---|---|
| date | Wed, 26 Aug 2015 16:37:10 +0100 |
| parents | 8e1efafa6277 |
| children |
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| 13:8a87a2c44d09 | 14:628f82e72d72 |
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| 1 ============ | 1 ============ |
| 2 Installation | 2 Installation |
| 3 ============ | 3 ============ |
| 4 | |
| 5 At the command line:: | 4 At the command line:: |
| 6 | 5 |
| 7 $ easy_install riboplot | 6 $ easy_install riboplot |
| 8 | 7 |
| 9 Or, if you have virtualenvwrapper installed:: | 8 Or, if you have virtualenvwrapper installed:: |
| 10 | 9 |
| 11 $ mkvirtualenv riboplot | 10 $ mkvirtualenv riboplot |
| 12 $ pip install riboplot | 11 $ pip install riboplot |
| 12 | |
| 13 .. note:: | |
| 14 | |
| 15 RNA coverage plot requires `bedtools <https://github.com/arq5x/bedtools2>`_ to be installed. | |
| 16 | |
| 17 This release of riboplot has been tested with bedtools version ``2.17.0``. | |
| 18 | |
| 19 On Ubuntu and derivatives, bedtools can be installed from the repositories using:: | |
| 20 | |
| 21 sudo apt-get install bedtools |