Mercurial > repos > vimalkumarvelayudhan > riboseqr_wrapper

comparison difftrans.xml @ 3:d7ce95ccf54f

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Change R data file format in xml wrappers (rda -> RData) Add test data, sample workflow. Updated README with instructions on testing.
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Wed, 22 Jul 2015 12:07:39 +0100
parents c34c364ce75d
children
comparison
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2:b2eb07000039 3:d7ce95ccf54f
23 --normalize "$normalize" 23 --normalize "$normalize"
24 --html_file "$html_file" 24 --html_file "$html_file"
25 --output_path "$html_file.files_path" 25 --output_path "$html_file.files_path"
26 </command> 26 </command>
27 <inputs> 27 <inputs>
28 <param name="rdata_load" format="rda" type="data" 28 <param name="rdata_load" format="RData" type="data"
29 label="Select Metagene analysis (R data file)" 29 label="Select Metagene analysis (R data file)"
30 multiple="false"> 30 multiple="false">
31 <validator type="expression" 31 <validator type="expression"
32 message="Please check if the correct RDA file is selected">value.name == "Metagene analysis (R data file)"</validator> 32 message="Please check if the correct RDA file is selected">value.name == "Metagene analysis (R data file)"</validator>
33 </param> 33 </param>
59 <data format="html" name="html_file" 59 <data format="html" name="html_file"
60 label="Differential Translation Analysis (HTML report)"/> 60 label="Differential Translation Analysis (HTML report)"/>
61 </outputs> 61 </outputs>
62 <!--<tests>--> 62 <!--<tests>-->
63 <!--<test>--> 63 <!--<test>-->
64 <!--<param name="rdata_load" value="Metagene analysis (R data file)"/>--> 64 <!--<param name="rdata_load" value="Metagene analysis (R data file)" ftype="RData" />-->
65 <!--<param name="slice_lengths" value="27,28"/>--> 65 <!--<param name="slice_lengths" value="27,28"/>-->
66 <!--<param name="frames" value="0,2"/>--> 66 <!--<param name="frames" value="0,2"/>-->
67 <!--<param name="group1" value="1,1,1,1"/>--> 67 <!--<param name="group1" value="1,1,1,1"/>-->
68 <!--<param name="group2" value="WT,WT,M,M"/>--> 68 <!--<param name="group2" value="WT,WT,M,M"/>-->
69 <!--<param name="normalize" checked="yes"/>--> 69 <!--<param name="normalize" checked="yes"/>-->