Mercurial > repos > vimalkumarvelayudhan > riboseqr_wrapper

comparison triplet.xml @ 6:5a242f289347 default tip

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Merge
author Vimalkumar Velayudhan <vimalkumarvelayudhan@gmail.com>
date Tue, 27 Oct 2015 12:29:39 +0000
parents d7ce95ccf54f
children
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5:423ad61697c4 6:5a242f289347
23 --rdata_save "$rdata_save" 23 --rdata_save "$rdata_save"
24 --html_file "$html_file" 24 --html_file "$html_file"
25 --output_path "$html_file.files_path" 25 --output_path "$html_file.files_path"
26 </command> 26 </command>
27 <inputs> 27 <inputs>
28 <param name="rdata_load" type="data" format="rda" 28 <param name="rdata_load" type="data" format="RData"
29 label="Select prepared riboSeqR input (R data file)" 29 label="Select prepared riboSeqR input (R data file)"
30 multiple="false" optional="false" 30 multiple="false" optional="false"
31 help="&lt;br&gt;&lt;h4&gt;&lt;font color=&quot;#666666&quot;&gt;findCDS 31 help="&lt;br&gt;&lt;h4&gt;&lt;font color=&quot;#666666&quot;&gt;findCDS
32 parameters&lt;/font&gt;&lt;/h4&gt;"> 32 parameters&lt;/font&gt;&lt;/h4&gt;">
33 <validator type="expression" 33 <validator type="expression"
77 value='Frame 0, Frame 1, Frame 2' 77 value='Frame 0, Frame 1, Frame 2'
78 label="Text for legend used in the 78 label="Text for legend used in the
79 plot" help="Comma-separated values."/> 79 plot" help="Comma-separated values."/>
80 </inputs> 80 </inputs>
81 <outputs> 81 <outputs>
82 <data format="rda" name="rdata_save" 82 <data format="RData" name="rdata_save"
83 label="Triplet periodicity (R data file)"/> 83 label="Triplet periodicity (R data file)"/>
84 <data format="html" name="html_file" 84 <data format="html" name="html_file"
85 label="Triplet periodicity (HTML report)"/> 85 label="Triplet periodicity (HTML report)"/>
86 </outputs> 86 </outputs>
87 <tests> 87 <!--<tests>-->
88 <test> 88 <!--<test>-->
89 <param name="rdata_load" value="Prepare riboSeqR input (R data file)" ftype="rda" /> 89 <!--<param name="rdata_load" value="Prepare riboSeqR input (R data file)" ftype="RData" />-->
90 <param name="fasta_file" value="rsem_chlamy236_deNovo.transcripts.fa" /> 90 <!--<param name="fasta_file" value="rsem_chlamy236_deNovo.transcripts.fa" />-->
91 <param name="include_lengths" value="25:30" /> 91 <!--<param name="include_lengths" value="25:30" />-->
92 <param name="analyze_plot_lengths" value="26:30" /> 92 <!--<param name="analyze_plot_lengths" value="26:30" />-->
93 <output name="rdata_save" file="Triplet periodicity (R data file)" ftype="rda" /> 93 <!--<output name="rdata_save" file="Triplet periodicity (R data file)" ftype="RData" />-->
94 <output name="html_file" file="Triplet_periodicity_(HTML_report).html"> 94 <!--<output name="html_file" file="Triplet_periodicity_(HTML_report).html">-->
95 <extra_files type="file" name="Periodicity-plot.png" value="Periodicity-plot.png" ftype="png" /> 95 <!--<extra_files type="file" name="Periodicity-plot.png" value="Periodicity-plot.png" ftype="png" />-->
96 <extra_files type="file" name="Periodicity-plot.pdf" value="Periodicity-plot.pdf" ftype="pdf" /> 96 <!--<extra_files type="file" name="Periodicity-plot.pdf" value="Periodicity-plot.pdf" ftype="pdf" />-->
97 </output> 97 <!--</output>-->
98 </test> 98 <!--</test>-->
99 </tests> 99 <!--</tests>-->
100 <help> 100 <help>
101 Triplet Periodicity 101 Triplet Periodicity
102 ------------------- 102 -------------------
103 riboSeqR version: ``1.0.5``. 103 riboSeqR version: ``1.0.5``.
104 104