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comparison deseq-hts_1.0/tools/ParseGFF.py @ 1:8ab01cc29c4b draft

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author vipints
date Wed, 27 Jun 2012 15:35:11 -0400
parents 94a108763d9e
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0:94a108763d9e 1:8ab01cc29c4b
340 gff_handle.close() 340 gff_handle.close()
341 return genes, transcripts, exons, utr3, utr5, cds 341 return genes, transcripts, exons, utr3, utr5, cds
342 342
343 def __main__(): 343 def __main__():
344 """This function provides a best way to extract genome feature 344 """This function provides a best way to extract genome feature
345 information from a GFF3 file for the rQuant downstream processing. 345 information from a GFF3 file for the downstream processing.
346 """ 346 """
347 try: 347 try:
348 gff_file = sys.argv[1] 348 gff_file = sys.argv[1]
349 mat_file = sys.argv[2] 349 mat_file = sys.argv[2]
350 except: 350 except: