Mercurial > repos > vipints > deseq_hts
view deseq-hts_1.0/bin/start_interpreter.sh @ 0:94a108763d9e draft
deseq-hts version 1.0 wraps the DESeq 1.6.0
author | vipints |
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date | Wed, 09 May 2012 20:43:47 -0400 |
parents | |
children | e27b4f7811c2 |
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#/bin/bash # Copyright (C) 2010-2012 Max Planck Society set -e . `dirname $0`/deseq_config.sh export MATLAB_RETURN_FILE=`tempfile` if [ "$INTERPRETER" == 'octave' ]; then echo exit | ${OCTAVE_BIN_PATH} --eval "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Octave failed; rm -f $MATLAB_RETURN_FILE; exit -1) ; fi if [ "$INTERPRETER" == 'matlab' ]; then echo exit | ${MATLAB_BIN_PATH} -nodisplay -r "global SHELL_INTERPRETER_INVOKE; SHELL_INTERPRETER_INVOKE=1; addpath $DESEQ_SRC_PATH; deseq_config; $1($2); exit;" || (echo starting Matlab failed; rm -f $MATLAB_RETURN_FILE; exit -1) ; fi test -f $MATLAB_RETURN_FILE || exit 0 ret=`cat $MATLAB_RETURN_FILE` ; rm -f $MATLAB_RETURN_FILE exit $ret