Mercurial > repos > vipints > fml_gff3togtf

comparison fml_gff_converter_programs/t/UCSC_transcripts.gff3 @ 0:ed53dca1c6ff

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author vipints
date Tue, 07 Jun 2011 17:26:20 -0400
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comparison
equal deleted inserted replaced
-1:000000000000 0:ed53dca1c6ff
1 ##gff-version 3
2 chr1 hg19_ccdsGene gene 896074 900571 . + . ID=Gene:CCDS30550.1;Name=Gene:CCDS30550.1
3 chr1 hg19_ccdsGene mRNA 896074 900571 0.000000 + . ID=Transcript:CCDS30550.1;Parent=Gene:CCDS30550.1
4 chr1 hg19_ccdsGene CDS 896074 896180 . + 0 Parent=Transcript:CCDS30550.1
5 chr1 hg19_ccdsGene CDS 896673 896932 . + 1 Parent=Transcript:CCDS30550.1
6 chr1 hg19_ccdsGene CDS 897009 897130 . + 2 Parent=Transcript:CCDS30550.1
7 chr1 hg19_ccdsGene CDS 897206 897427 . + 0 Parent=Transcript:CCDS30550.1
8 chr1 hg19_ccdsGene CDS 897735 897851 . + 0 Parent=Transcript:CCDS30550.1
9 chr1 hg19_ccdsGene CDS 898084 898297 . + 0 Parent=Transcript:CCDS30550.1
10 chr1 hg19_ccdsGene CDS 898489 898633 . + 2 Parent=Transcript:CCDS30550.1
11 chr1 hg19_ccdsGene CDS 898717 898884 . + 1 Parent=Transcript:CCDS30550.1
12 chr1 hg19_ccdsGene CDS 899300 899388 . + 1 Parent=Transcript:CCDS30550.1
13 chr1 hg19_ccdsGene CDS 899487 899560 . + 2 Parent=Transcript:CCDS30550.1
14 chr1 hg19_ccdsGene CDS 899729 899910 . + 0 Parent=Transcript:CCDS30550.1
15 chr1 hg19_ccdsGene CDS 900343 900571 . + 1 Parent=Transcript:CCDS30550.1
16 chr1 hg19_ccdsGene exon 896074 896180 . + . Parent=Transcript:CCDS30550.1
17 chr1 hg19_ccdsGene exon 896673 896932 . + . Parent=Transcript:CCDS30550.1
18 chr1 hg19_ccdsGene exon 897009 897130 . + . Parent=Transcript:CCDS30550.1
19 chr1 hg19_ccdsGene exon 897206 897427 . + . Parent=Transcript:CCDS30550.1
20 chr1 hg19_ccdsGene exon 897735 897851 . + . Parent=Transcript:CCDS30550.1
21 chr1 hg19_ccdsGene exon 898084 898297 . + . Parent=Transcript:CCDS30550.1
22 chr1 hg19_ccdsGene exon 898489 898633 . + . Parent=Transcript:CCDS30550.1
23 chr1 hg19_ccdsGene exon 898717 898884 . + . Parent=Transcript:CCDS30550.1
24 chr1 hg19_ccdsGene exon 899300 899388 . + . Parent=Transcript:CCDS30550.1
25 chr1 hg19_ccdsGene exon 899487 899560 . + . Parent=Transcript:CCDS30550.1
26 chr1 hg19_ccdsGene exon 899729 899910 . + . Parent=Transcript:CCDS30550.1
27 chr1 hg19_ccdsGene exon 900343 900571 . + . Parent=Transcript:CCDS30550.1
28 chr1 hg19_ccdsGene gene 880074 894620 . - . ID=Gene:CCDS3.1;Name=Gene:CCDS3.1
29 chr1 hg19_ccdsGene mRNA 880074 894620 0.000000 - . ID=Transcript:CCDS3.1;Parent=Gene:CCDS3.1
30 chr1 hg19_ccdsGene CDS 880074 880180 . - 2 Parent=Transcript:CCDS3.1
31 chr1 hg19_ccdsGene CDS 880437 880526 . - 2 Parent=Transcript:CCDS3.1
32 chr1 hg19_ccdsGene CDS 880898 881033 . - 0 Parent=Transcript:CCDS3.1
33 chr1 hg19_ccdsGene CDS 881553 881666 . - 0 Parent=Transcript:CCDS3.1
34 chr1 hg19_ccdsGene CDS 881782 881925 . - 0 Parent=Transcript:CCDS3.1
35 chr1 hg19_ccdsGene CDS 883511 883612 . - 0 Parent=Transcript:CCDS3.1
36 chr1 hg19_ccdsGene CDS 883870 883983 . - 0 Parent=Transcript:CCDS3.1
37 chr1 hg19_ccdsGene CDS 886507 886618 . - 1 Parent=Transcript:CCDS3.1
38 chr1 hg19_ccdsGene CDS 887380 887519 . - 0 Parent=Transcript:CCDS3.1
39 chr1 hg19_ccdsGene CDS 887792 887980 . - 0 Parent=Transcript:CCDS3.1
40 chr1 hg19_ccdsGene CDS 888555 888668 . - 0 Parent=Transcript:CCDS3.1
41 chr1 hg19_ccdsGene CDS 889162 889272 . - 0 Parent=Transcript:CCDS3.1
42 chr1 hg19_ccdsGene CDS 889384 889462 . - 1 Parent=Transcript:CCDS3.1
43 chr1 hg19_ccdsGene CDS 891303 891393 . - 2 Parent=Transcript:CCDS3.1
44 chr1 hg19_ccdsGene CDS 891475 891595 . - 0 Parent=Transcript:CCDS3.1
45 chr1 hg19_ccdsGene CDS 892274 892405 . - 0 Parent=Transcript:CCDS3.1
46 chr1 hg19_ccdsGene CDS 892479 892653 . - 1 Parent=Transcript:CCDS3.1
47 chr1 hg19_ccdsGene CDS 894309 894461 . - 1 Parent=Transcript:CCDS3.1
48 chr1 hg19_ccdsGene CDS 894595 894620 . - 0 Parent=Transcript:CCDS3.1
49 chr1 hg19_ccdsGene exon 880074 880180 . - . Parent=Transcript:CCDS3.1
50 chr1 hg19_ccdsGene exon 880437 880526 . - . Parent=Transcript:CCDS3.1
51 chr1 hg19_ccdsGene exon 880898 881033 . - . Parent=Transcript:CCDS3.1
52 chr1 hg19_ccdsGene exon 881553 881666 . - . Parent=Transcript:CCDS3.1
53 chr1 hg19_ccdsGene exon 881782 881925 . - . Parent=Transcript:CCDS3.1
54 chr1 hg19_ccdsGene exon 883511 883612 . - . Parent=Transcript:CCDS3.1
55 chr1 hg19_ccdsGene exon 883870 883983 . - . Parent=Transcript:CCDS3.1
56 chr1 hg19_ccdsGene exon 886507 886618 . - . Parent=Transcript:CCDS3.1
57 chr1 hg19_ccdsGene exon 887380 887519 . - . Parent=Transcript:CCDS3.1
58 chr1 hg19_ccdsGene exon 887792 887980 . - . Parent=Transcript:CCDS3.1
59 chr1 hg19_ccdsGene exon 888555 888668 . - . Parent=Transcript:CCDS3.1
60 chr1 hg19_ccdsGene exon 889162 889272 . - . Parent=Transcript:CCDS3.1
61 chr1 hg19_ccdsGene exon 889384 889462 . - . Parent=Transcript:CCDS3.1
62 chr1 hg19_ccdsGene exon 891303 891393 . - . Parent=Transcript:CCDS3.1
63 chr1 hg19_ccdsGene exon 891475 891595 . - . Parent=Transcript:CCDS3.1
64 chr1 hg19_ccdsGene exon 892274 892405 . - . Parent=Transcript:CCDS3.1
65 chr1 hg19_ccdsGene exon 892479 892653 . - . Parent=Transcript:CCDS3.1
66 chr1 hg19_ccdsGene exon 894309 894461 . - . Parent=Transcript:CCDS3.1
67 chr1 hg19_ccdsGene exon 894595 894620 . - . Parent=Transcript:CCDS3.1
68 chr1 hg19_ccdsGene gene 861322 879533 . + . ID=Gene:CCDS2.2;Name=Gene:CCDS2.2
69 chr1 hg19_ccdsGene mRNA 861322 879533 0.000000 + . ID=Transcript:CCDS2.2;Parent=Gene:CCDS2.2
70 chr1 hg19_ccdsGene CDS 861322 861393 . + 0 Parent=Transcript:CCDS2.2
71 chr1 hg19_ccdsGene CDS 865535 865716 . + 0 Parent=Transcript:CCDS2.2
72 chr1 hg19_ccdsGene CDS 866419 866469 . + 1 Parent=Transcript:CCDS2.2
73 chr1 hg19_ccdsGene CDS 871152 871276 . + 1 Parent=Transcript:CCDS2.2
74 chr1 hg19_ccdsGene CDS 874420 874509 . + 2 Parent=Transcript:CCDS2.2
75 chr1 hg19_ccdsGene CDS 874655 874840 . + 2 Parent=Transcript:CCDS2.2
76 chr1 hg19_ccdsGene CDS 876524 876686 . + 2 Parent=Transcript:CCDS2.2
77 chr1 hg19_ccdsGene CDS 877516 877631 . + 1 Parent=Transcript:CCDS2.2
78 chr1 hg19_ccdsGene CDS 877790 877868 . + 2 Parent=Transcript:CCDS2.2
79 chr1 hg19_ccdsGene CDS 877939 878438 . + 1 Parent=Transcript:CCDS2.2
80 chr1 hg19_ccdsGene CDS 878633 878757 . + 2 Parent=Transcript:CCDS2.2
81 chr1 hg19_ccdsGene CDS 879078 879188 . + 0 Parent=Transcript:CCDS2.2
82 chr1 hg19_ccdsGene CDS 879288 879533 . + 0 Parent=Transcript:CCDS2.2
83 chr1 hg19_ccdsGene exon 861322 861393 . + . Parent=Transcript:CCDS2.2
84 chr1 hg19_ccdsGene exon 865535 865716 . + . Parent=Transcript:CCDS2.2
85 chr1 hg19_ccdsGene exon 866419 866469 . + . Parent=Transcript:CCDS2.2
86 chr1 hg19_ccdsGene exon 871152 871276 . + . Parent=Transcript:CCDS2.2
87 chr1 hg19_ccdsGene exon 874420 874509 . + . Parent=Transcript:CCDS2.2
88 chr1 hg19_ccdsGene exon 874655 874840 . + . Parent=Transcript:CCDS2.2
89 chr1 hg19_ccdsGene exon 876524 876686 . + . Parent=Transcript:CCDS2.2
90 chr1 hg19_ccdsGene exon 877516 877631 . + . Parent=Transcript:CCDS2.2
91 chr1 hg19_ccdsGene exon 877790 877868 . + . Parent=Transcript:CCDS2.2
92 chr1 hg19_ccdsGene exon 877939 878438 . + . Parent=Transcript:CCDS2.2
93 chr1 hg19_ccdsGene exon 878633 878757 . + . Parent=Transcript:CCDS2.2
94 chr1 hg19_ccdsGene exon 879078 879188 . + . Parent=Transcript:CCDS2.2
95 chr1 hg19_ccdsGene exon 879288 879533 . + . Parent=Transcript:CCDS2.2
96 chr1 hg19_ccdsGene gene 901912 909955 . + . ID=Gene:CCDS4.1;Name=Gene:CCDS4.1
97 chr1 hg19_ccdsGene mRNA 901912 909955 0.000000 + . ID=Transcript:CCDS4.1;Parent=Gene:CCDS4.1
98 chr1 hg19_ccdsGene CDS 901912 901994 . + 0 Parent=Transcript:CCDS4.1
99 chr1 hg19_ccdsGene CDS 902084 902183 . + 1 Parent=Transcript:CCDS4.1
100 chr1 hg19_ccdsGene CDS 905657 905803 . + 0 Parent=Transcript:CCDS4.1
101 chr1 hg19_ccdsGene CDS 905901 905981 . + 0 Parent=Transcript:CCDS4.1
102 chr1 hg19_ccdsGene CDS 906066 906138 . + 0 Parent=Transcript:CCDS4.1
103 chr1 hg19_ccdsGene CDS 906259 906386 . + 2 Parent=Transcript:CCDS4.1
104 chr1 hg19_ccdsGene CDS 906493 906588 . + 0 Parent=Transcript:CCDS4.1
105 chr1 hg19_ccdsGene CDS 906704 906784 . + 0 Parent=Transcript:CCDS4.1
106 chr1 hg19_ccdsGene CDS 907455 907530 . + 0 Parent=Transcript:CCDS4.1
107 chr1 hg19_ccdsGene CDS 907668 907804 . + 2 Parent=Transcript:CCDS4.1
108 chr1 hg19_ccdsGene CDS 908241 908390 . + 0 Parent=Transcript:CCDS4.1
109 chr1 hg19_ccdsGene CDS 908566 908706 . + 0 Parent=Transcript:CCDS4.1
110 chr1 hg19_ccdsGene CDS 908880 909020 . + 0 Parent=Transcript:CCDS4.1
111 chr1 hg19_ccdsGene CDS 909213 909431 . + 0 Parent=Transcript:CCDS4.1
112 chr1 hg19_ccdsGene CDS 909696 909744 . + 0 Parent=Transcript:CCDS4.1
113 chr1 hg19_ccdsGene CDS 909822 909955 . + 2 Parent=Transcript:CCDS4.1
114 chr1 hg19_ccdsGene exon 901912 901994 . + . Parent=Transcript:CCDS4.1
115 chr1 hg19_ccdsGene exon 902084 902183 . + . Parent=Transcript:CCDS4.1
116 chr1 hg19_ccdsGene exon 905657 905803 . + . Parent=Transcript:CCDS4.1
117 chr1 hg19_ccdsGene exon 905901 905981 . + . Parent=Transcript:CCDS4.1
118 chr1 hg19_ccdsGene exon 906066 906138 . + . Parent=Transcript:CCDS4.1
119 chr1 hg19_ccdsGene exon 906259 906386 . + . Parent=Transcript:CCDS4.1
120 chr1 hg19_ccdsGene exon 906493 906588 . + . Parent=Transcript:CCDS4.1
121 chr1 hg19_ccdsGene exon 906704 906784 . + . Parent=Transcript:CCDS4.1
122 chr1 hg19_ccdsGene exon 907455 907530 . + . Parent=Transcript:CCDS4.1
123 chr1 hg19_ccdsGene exon 907668 907804 . + . Parent=Transcript:CCDS4.1
124 chr1 hg19_ccdsGene exon 908241 908390 . + . Parent=Transcript:CCDS4.1
125 chr1 hg19_ccdsGene exon 908566 908706 . + . Parent=Transcript:CCDS4.1
126 chr1 hg19_ccdsGene exon 908880 909020 . + . Parent=Transcript:CCDS4.1
127 chr1 hg19_ccdsGene exon 909213 909431 . + . Parent=Transcript:CCDS4.1
128 chr1 hg19_ccdsGene exon 909696 909744 . + . Parent=Transcript:CCDS4.1
129 chr1 hg19_ccdsGene exon 909822 909955 . + . Parent=Transcript:CCDS4.1