Mercurial > repos > vipints > fml_gff3togtf
diff GFFtools-GX/test-data/MB7_3R.bed @ 3:ff2c2e6f4ab3
Uploaded version 2.0.0 of gfftools ready to import to local instance
author | vipints |
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date | Wed, 11 Jun 2014 16:29:25 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GFFtools-GX/test-data/MB7_3R.bed Wed Jun 11 16:29:25 2014 -0400 @@ -0,0 +1,241 @@ +3R 60868 66780 CG1106-RD 2 + 60868 66780 0 10 179,61,43,252,193,75,196,1706,126,181, 0,942,1093,1407,2479,3157,3424,3673,5443,5732, +3R 60868 66780 CG1106-RF 3 + 60868 66780 0 8 179,223,193,75,196,1706,126,181, 0,1436,2479,3157,3424,3673,5443,5732, +3R 485305 530979 CG31531-RC 2 + 485305 530979 0 9 311,161,54,59,352,207,143,157,4100, 0,656,11214,21196,37608,38466,40134,40588,41575, +3R 62515 66780 CG1106-RA 1 + 62515 66780 0 7 147,193,75,196,1706,126,181, 0,832,1510,1777,2026,3796,4085, +3R 60868 66780 CG1106-RB 1 + 60868 66780 0 8 179,252,193,75,196,1706,126,181, 0,1407,2479,3157,3424,3673,5443,5732, +3R 44184 45852 CG31516.a 31 - 44184 45852 0 1 1669, 0, +3R 60868 66780 CG1106-RH 1 + 60868 66780 0 9 179,61,252,193,75,196,1706,126,181, 0,942,1407,2479,3157,3424,3673,5443,5732, +3R 612767 627445 CG42574.b 3 - 612767 627445 0 9 1243,202,189,1836,989,1105,1847,987,511, 0,1329,1636,1888,3831,4913,6173,12647,14168, +3R 612767 627445 CG42574.a 3 - 612767 627445 0 11 1243,202,189,1836,989,1105,1847,87,579,987,511, 0,1329,1636,1888,3831,4913,6173,8692,9444,12647,14168, +3R 538609 539918 CG9769-RA.3d 31 - 538609 539918 0 1 1310, 0, +3R 94943 103515 CG9766-RB 1 - 94943 103515 0 4 568,205,246,165, 0,627,888,8408, +3R 17136 21871 DMG5-MB6.chr3R.1.002.a.a 2 + 17136 21871 0 6 116,95,486,540,168,281, 0,2817,2978,3535,4231,4455, +3R 44179 45852 CG31516-RA 34 - 44179 45852 0 1 1674, 0, +3R 228771 232914 CG14648-RA 1 + 228771 232914 0 6 232,171,719,69,211,1326, 0,1420,1652,2431,2552,2818, +3R 1053010 1057940 CG10229-RA 1 - 1053010 1057940 0 6 903,560,122,604,222,162, 0,989,2419,2734,3705,4769, +3R 310763 313185 CG1078-RA 1 + 310763 313185 0 4 1491,93,71,516, 0,1555,1780,1907, +3R 15388 16170 CG18090-RA 34 - 15388 16170 0 1 783, 0, +3R 74439 76518 CG14643-RA 1 - 74439 76518 0 4 301,655,608,62, 0,474,1190,2018, +3R 117996 120558 CG9780-RA 1 - 117996 120558 0 2 1094,1084, 0,1479, +3R 1090664 1094197 CG31543-RA 1 + 1090664 1094197 0 5 696,280,81,140,1014, 0,1811,2179,2321,2520, +3R 1082763 1094197 CG31543-RC 1 + 1082763 1094197 0 5 1081,280,81,140,1014, 0,9712,10080,10222,10421, +3R 1063223 1077468 CG12163-RA 1 - 1063223 1077468 0 6 656,182,744,128,417,323, 0,712,953,1991,6337,13923, +3R 470349 471316 CG9771-RA 1 - 470349 471316 0 2 450,414, 0,554, +3R 92676 94166 CG1092.a 1 + 92676 94166 0 2 252,1184, 0,307, +3R 306534 309943 CG14651-RB 34 + 306534 309943 0 1 3410, 0, +3R 160820 161237 CG14645-RA 34 + 160820 161237 0 1 418, 0, +3R 161164 163374 CG9772-RD 1 - 161164 163374 0 4 288,160,400,1184, 0,344,567,1027, +3R 255639 259652 CG9805-RA 1 - 255639 259652 0 4 252,2239,1085,232, 0,311,2600,3782, +3R 161143 163408 CG9772-RA 2 - 161143 163408 0 5 309,160,400,874,139, 0,365,588,1048,2127, +3R 23030 30295 CG12582-RB 1 + 23030 30295 0 8 564,514,97,289,480,422,381,361, 0,951,1522,1697,4535,5068,6474,6905, +3R 22997 30295 CG12582-RA 1 + 22997 30295 0 9 288,135,514,97,289,480,422,381,361, 0,462,984,1555,1730,4568,5101,6507,6938, +3R 161143 165287 CG9772-RB 2 - 161143 165287 0 5 309,160,400,874,199, 0,365,588,1048,3946, +3R 15414 15982 CG18090.a 31 - 15414 15982 0 1 569, 0, +3R 135364 136669 CG9779-RA 1 - 135364 136669 0 3 717,241,161, 0,772,1145, +3R 438597 459031 CG1056-RA 2 + 438597 459031 0 7 476,1116,225,199,444,393,1502, 0,9634,14098,14384,15031,17254,18933, +3R 467696 470358 CG18271-RB 1 + 467696 470358 0 2 35,1093, 0,1570, +3R 1045390 1047270 CG1116.a 3 + 1045390 1047270 0 6 188,218,272,150,577,157, 0,248,531,868,1081,1724, +3R 145412 151817 CG9795-RB 3 + 145412 151817 0 10 167,203,392,203,212,174,85,82,589,399, 0,2155,3541,3997,4263,4647,4898,5040,5183,6007, +3R 145412 151817 CG9795-RC 3 + 145412 151817 0 10 201,203,392,203,212,174,85,82,589,399, 0,2155,3541,3997,4263,4647,4898,5040,5183,6007, +3R 248610 255054 CG9809-RD 1 - 248610 255054 0 7 777,146,1832,795,106,119,358, 0,840,1045,2943,3835,3994,6087, +3R 72744 74040 CG14639-RA 1 + 72744 74040 0 2 63,1175, 0,122, +3R 248220 255054 CG9809-RB 1 - 248220 255054 0 7 1167,146,1832,822,106,119,358, 0,1230,1435,3333,4225,4384,6477, +3R 145412 152096 CG9795-RD 1 + 145412 152096 0 10 167,203,392,203,212,174,85,82,617,678, 0,2155,3541,3997,4263,4647,4898,5040,5183,6007, +3R 212967 215535 CG10520-RB 1 + 212967 215535 0 3 72,912,1355, 0,236,1214, +3R 47366 53244 CG1107.a 3 + 47366 53244 0 8 343,140,933,410,374,962,162,772, 0,414,614,2955,3422,3854,4886,5107, +3R 1058268 1062011 CG12005-RB 1 + 1058268 1062011 0 6 181,384,350,1446,423,447, 0,245,839,1247,2760,3297, +3R 953812 955661 CG12007.a 34 + 953812 955661 0 1 1850, 0, +3R 1081166 1082423 CG12173-RB 1 - 1081166 1082423 0 3 176,257,454, 0,238,804, +3R 330333 331985 CG34425-RA 34 - 330333 331985 0 1 1653, 0, +3R 782717 787070 CG2016-RB 1 - 782717 787070 0 7 229,153,134,122,119,80,37, 0,295,506,2642,2909,3899,4317, +3R 639363 641751 CG1129.a 3 + 639363 641751 0 3 336,535,743, 0,598,1646, +3R 642055 643489 CG1126.a 1 + 642055 643489 0 4 96,405,238,525, 0,154,619,910, +3R 46717 53244 CG1107-RB 1 + 46717 53244 0 9 323,231,140,933,410,374,962,162,772, 0,761,1063,1263,3604,4071,4503,5535,5756, +3R 37505 53244 CG1107-RA 3 + 37505 53244 0 13 30,8,124,68,200,231,140,933,410,374,962,162,772, 0,125,5661,6464,9335,9973,10275,10475,12816,13283,13715,14747,14968, +3R 545519 557597 CG9761-RA 1 - 545519 557597 0 9 308,187,251,410,377,177,215,506,330, 0,427,668,1184,2977,3407,3718,3999,11749, +3R 221815 223609 CG9855-RA 1 - 221815 223609 0 4 710,197,529,180, 0,767,1019,1615, +3R 77614 78765 CG14644.a 2 - 77614 78765 0 3 351,417,229, 0,406,923, +3R 66767 68508 CG14642-RA 1 - 66767 68508 0 5 88,667,110,99,449, 0,208,933,1130,1293, +3R 66855 68508 CG14642-RB 3 - 66855 68508 0 5 566,165,110,116,449, 0,622,845,1025,1205, +3R 242059 243377 CG31528.a 34 + 242059 243377 0 1 1319, 0, +3R 531868 537915 CG31534-RC 3 + 531868 537915 0 7 220,1081,374,911,200,148,1296, 0,880,2530,3014,4031,4470,4752, +3R 248220 255054 CG9809.a 1 - 248220 255054 0 6 1376,1832,822,106,119,358, 0,1435,3333,4225,4384,6477, +3R 1098665 1149566 CG32464-RB 1 - 1098665 1149566 0 19 1140,170,160,122,202,163,152,173,550,155,107,489,288,104,72,509,368,138,180, 0,1206,1792,2023,19697,20055,20276,21119,21363,22698,22914,23204,25259,26527,31168,40046,40995,50045,50722, +3R 22931 30295 CG12582.b 3 + 22931 30295 0 9 93,457,514,97,289,480,422,381,361, 0,206,1050,1621,1796,4634,5167,6573,7004, +3R 108172 127263 CG32490.f 3 + 108172 127263 0 7 33,161,181,167,133,1098,1752, 0,224,1776,12670,13118,15038,17340, +3R 1098665 1149566 CG32464-RN 3 - 1098665 1149566 0 19 1140,170,160,122,202,163,152,173,550,155,107,489,288,104,72,509,368,138,153, 0,1206,1792,2023,19697,20055,20276,21119,21363,22698,22914,23204,25259,26527,31168,40046,40995,50045,50749, +3R 1081176 1082423 CG12173-RA 1 - 1081176 1082423 0 3 166,257,454, 0,228,794, +3R 531868 537915 CG31534-RA 3 + 531868 537915 0 6 220,1081,374,911,176,1296, 0,880,2530,3014,4031,4752, +3R 1098665 1149566 CG32464-RU 3 - 1098665 1149566 0 18 1140,170,160,122,202,163,152,173,550,155,107,489,288,104,509,368,138,180, 0,1206,1792,2023,19697,20055,20276,21119,21363,22698,22914,23204,25259,26527,40046,40995,50045,50722, +3R 807721 809954 CG14662-RA 1 - 807721 809954 0 2 395,1605, 0,629, +3R 1063223 1077468 CG12163-RB 2 - 1063223 1077468 0 5 656,182,744,128,323, 0,712,953,1991,13923, +3R 252752 253927 CG31525-RA 34 + 252752 253927 0 1 1176, 0, +3R 242153 243389 CG31528-RA 34 + 242153 243389 0 1 1237, 0, +3R 1053010 1057940 CG10229.a 3 - 1053010 1057940 0 6 903,560,122,604,222,313, 0,989,2419,2734,3705,4618, +3R 226212 227739 CG14647-RB 1 + 226212 227739 0 3 649,132,417, 0,864,1111, +3R 1053010 1057940 CG10229.b 3 - 1053010 1057940 0 6 903,560,122,604,321,162, 0,989,2419,2734,3705,4769, +3R 606847 610444 CG17387-RA.3d 1 - 606847 610444 0 4 841,1809,148,290, 0,1162,3102,3308, +3R 133630 135559 CG1102-RA 1 + 133630 135559 0 4 149,164,214,943, 0,356,712,987, +3R 141310 144791 CG9778-RA 1 - 141310 144791 0 5 1519,236,333,162,488, 0,2066,2368,2760,2994, +3R 999324 1043147 CG42312-RE 1 - 999324 1043147 0 20 394,122,2026,217,249,119,248,525,466,207,245,55,122,353,82,519,194,109,211,493, 0,454,663,3692,4035,7455,7634,7946,8818,10175,10677,10985,11767,13706,28043,28466,29058,29448,29622,43331, +3R 1098665 1149566 CG32464.a 3 - 1098665 1149566 0 19 1140,170,160,122,202,163,152,173,550,155,107,489,288,104,72,509,368,138,406, 0,1206,1792,2023,19697,20055,20276,21119,21363,22698,22914,23204,25259,26527,31168,40046,40995,50045,50496, +3R 603219 606053 CG14655-RA 1 - 603219 606053 0 3 843,610,713, 0,1013,2122, +3R 361 10200 CG12581-RB 3 + 361 10200 0 4 149,1336,866,762, 0,217,7423,9078, +3R 1051882 1053248 CG1115-RA 1 + 1051882 1053248 0 2 819,203, 0,1164, +3R 380 10200 CG12581-RA 1 + 380 10200 0 3 1534,866,762, 0,7404,9059, +3R 1047347 1049197 CG2604-RA 1 - 1047347 1049197 0 2 1564,226, 0,1625, +3R 1047359 1049197 CG2604-RC 2 - 1047359 1049197 0 2 1510,226, 0,1613, +3R 58765 60763 CG14637-RA 31 + 58765 60763 0 1 1999, 0, +3R 358950 359693 CG31526-RB 2 + 358950 359693 0 3 204,320,104, 0,265,640, +3R 358950 359666 CG31526-RA 1 + 358950 359666 0 2 204,452, 0,265, +3R 224272 225734 CG9853-RA 1 - 224272 225734 0 3 836,235,271, 0,896,1192, +3R 463731 467317 CG9775-RA 1 - 463731 467317 0 6 401,296,540,119,324,267, 0,535,1009,1625,2004,3320, +3R 224272 227749 CG9853-RB 2 - 224272 227749 0 4 836,235,449,306, 0,896,1192,3172, +3R 463732 467317 CG9775-RD 1 - 463732 467317 0 3 830,1319,267, 0,1008,3319, +3R 68507 68868 CG34305-RA 1 - 68507 68868 0 2 275,25, 0,337, +3R 77614 78765 CG14644-RA 1 - 77614 78765 0 3 351,517,168, 0,406,984, +3R 622113 627445 CG14656-RA 3 - 622113 627445 0 3 1307,987,511, 0,3301,4822, +3R 656571 657019 CG14659-RA.3d 31 - 656571 657019 0 1 449, 0, +3R 701727 704255 CG14660-RA 1 - 701727 704255 0 3 727,1617,57, 0,804,2472, +3R 678535 695709 CG1133-RA 1 + 678535 695709 0 3 1242,170,1535, 0,15330,15640, +3R 137258 140094 CG9791-RC 1 + 137258 140094 0 6 439,504,310,135,630,531, 0,494,1061,1425,1622,2306, +3R 782717 787070 CG2016.a 3 - 782717 787070 0 6 229,153,134,122,119,37, 0,295,506,2642,2909,4317, +3R 94943 102759 CG9766.a 2 - 94943 102759 0 4 568,205,246,56, 0,627,888,7761, +3R 463731 466757 CG9775-RC 2 - 463731 466757 0 6 401,296,540,119,324,20, 0,535,1009,1625,2004,3007, +3R 976630 995849 CG12591-RA 1 + 976630 995849 0 6 379,575,1094,227,106,680, 0,2615,14430,15955,16252,18540, +3R 1063223 1077468 CG12163.a 2 - 1063223 1077468 0 5 656,182,744,128,329, 0,712,953,1991,13917, +3R 644020 647150 CG14657-RB 1 - 644020 647150 0 3 1440,117,1096, 0,1496,2035, +3R 92694 94005 CG1092-RB 34 + 92694 94005 0 1 1312, 0, +3R 1043473 1045168 CG12161-RA 1 - 1043473 1045168 0 3 955,180,102, 0,1020,1594, +3R 92676 94166 CG1092-RA 1 + 92676 94166 0 2 252,1184, 0,307, +3R 306442 309937 CG14651.a 34 + 306442 309937 0 1 3496, 0, +3R 438597 459026 CG1056-RB 3 + 438597 459026 0 8 476,1116,225,199,444,393,297,567, 0,9634,14098,14384,15031,17254,18933,19863, +3R 463732 467317 CG9775.a 2 - 463732 467317 0 5 830,540,119,324,267, 0,1008,1624,2003,3319, +3R 259715 261897 CG1074.a 3 + 259715 261897 0 3 167,796,669, 0,662,1514, +3R 1090666 1094320 CG31543-RB.3d 1 + 1090666 1094320 0 5 259,280,81,140,1137, 0,1809,2177,2319,2518, +3R 438597 454784 CG1056-RD 1 + 438597 454784 0 5 476,1116,225,199,1157, 0,9634,14098,14384,15031, +3R 612767 627445 CG42574-RA 3 - 612767 627445 0 11 1243,202,189,1836,989,1105,1847,87,1209,987,511, 0,1329,1636,1888,3831,4913,6173,8692,9444,12647,14168, +3R 1084193 1084867 CG14666-RA 34 - 1084193 1084867 0 1 675, 0, +3R 471653 474613 CG1058-RA 1 + 471653 474613 0 4 400,103,575,1497, 0,645,815,1464, +3R 474945 480360 CG1059-RA 1 + 474945 480360 0 5 545,150,1095,1354,1187, 0,1362,1576,2760,4229, +3R 752643 764363 CG34306-RA 2 + 752643 764363 0 2 5670,5912, 0,5809, +3R 779225 780974 CG14661-RA 1 - 779225 780974 0 3 776,95,215, 0,833,1535, +3R 791168 794226 CG1124-RA 1 + 791168 794226 0 4 202,110,415,407, 0,1683,2175,2652, +3R 962779 963295 CG12589-RA.3d 31 - 962779 963295 0 1 517, 0, +3R 909343 912749 CG2530-RA.5d 34 - 909343 912749 0 1 3407, 0, +3R 30207 41034 CG14636-RB 2 - 30207 41034 0 2 1301,190, 0,10638, +3R 30207 41034 CG14636-RA 1 - 30207 41034 0 2 1301,167, 0,10661, +3R 998392 1043147 CG42312-RC 1 - 998392 1043147 0 17 1326,122,2026,217,249,119,248,525,466,122,353,82,519,194,109,211,493, 0,1386,1595,4624,4967,8387,8566,8878,9750,12699,14638,28975,29398,29990,30380,30554,44263, +3R 736279 771295 CG31536.a 2 + 736279 771295 0 13 529,735,233,222,244,161,75,107,116,256,1266,487,599, 0,6840,12035,12390,12677,12975,13197,14989,15337,15519,30118,31745,34418, +3R 145412 151818 CG9795.b 2 + 145412 151818 0 10 201,203,392,203,212,174,85,82,617,400, 0,2155,3541,3997,4263,4647,4898,5040,5183,6007, +3R 485305 530979 CG31531-RA 2 + 485305 530979 0 9 94,161,54,59,352,207,143,157,4100, 0,656,11214,21196,37608,38466,40134,40588,41575, +3R 485323 530979 CG31531-RB 1 + 485323 530979 0 8 799,54,59,352,207,143,157,4100, 0,11196,21178,37590,38448,40116,40570,41557, +3R 145414 151818 CG9795.a 2 + 145414 151818 0 11 199,203,148,392,203,212,174,85,82,617,400, 0,2153,2656,3539,3995,4261,4645,4896,5038,5181,6005, +3R 185510 192577 CG1090.b 3 + 185510 192577 0 6 500,231,945,976,189,907, 0,3490,3774,4778,5914,6161, +3R 612767 620844 CG17735-RB 3 - 612767 620844 0 7 1243,202,189,1836,989,1105,1905, 0,1329,1636,1888,3831,4913,6173, +3R 467696 469014 CG1057-RA 1 + 467696 469014 0 3 455,90,542, 0,595,777, +3R 161143 163408 CG9772-RC 1 - 161143 163408 0 3 525,1334,139, 0,588,2127, +3R 736278 749883 CG31536-RC 1 + 736278 749883 0 7 530,735,233,222,244,161,408, 0,6841,12036,12391,12678,12976,13198, +3R 467696 469014 CG1057-RB 2 + 467696 469014 0 4 35,145,90,542, 0,310,595,777, +3R 1098665 1149566 CG32464-RJ 3 - 1098665 1149566 0 19 1140,170,160,122,202,163,152,173,550,155,107,489,288,104,72,509,368,138,106, 0,1206,1792,2023,19697,20055,20276,21119,21363,22698,22914,23204,25259,26527,31168,40046,40995,50045,50796, +3R 53106 55310 CG18143-RA.5d 1 - 53106 55310 0 5 709,274,155,261,544, 0,764,1096,1344,1661, +3R 560132 565354 CG9765.c 2 - 560132 565354 0 8 937,150,162,105,72,65,266,61, 0,998,1232,2613,2771,2904,3063,5162, +3R 560132 565269 CG9765.b 2 - 560132 565269 0 8 937,150,162,105,72,65,290,37, 0,998,1232,2613,2771,2904,3063,5101, +3R 560132 564709 CG9765.a 2 - 560132 564709 0 9 937,150,162,105,72,65,308,117,104, 0,998,1232,2613,2771,2904,3063,3655,4474, +3R 655633 656321 CG14658.a 34 - 655633 656321 0 1 689, 0, +3R 267137 276555 CG31522.a 3 - 267137 276555 0 10 1641,156,137,106,57,81,108,83,254,124, 0,2487,2697,2907,3091,4751,5010,5325,6286,9295, +3R 1065728 1066457 CG33293-RA 1 - 1065728 1066457 0 2 573,96, 0,634, +3R 812222 836754 CG2022-RB 1 - 812222 836754 0 4 387,208,228,80, 0,1751,2038,24453, +3R 634058 637788 CG2525-RA 1 - 634058 637788 0 2 939,84, 0,3647, +3R 774476 778406 CG2013-RA 1 - 774476 778406 0 3 1651,286,232, 0,1713,3699, +3R 1061780 1063038 CG10233-RA 1 - 1061780 1063038 0 3 609,301,85, 0,815,1174, +3R 1062472 1063038 CG10233-RB 2 - 1062472 1063038 0 2 424,85, 0,482, +3R 560132 565269 CG9765-RG 2 - 560132 565269 0 8 937,150,162,105,72,65,308,37, 0,998,1232,2613,2771,2904,3063,5101, +3R 732340 735803 CG1119-RB 1 + 732340 735803 0 4 105,1331,909,933, 0,171,1564,2531, +3R 732340 735803 CG1119-RA 1 + 732340 735803 0 4 105,1331,843,933, 0,171,1630,2531, +3R 531868 537915 CG31534-RB 1 + 531868 537915 0 7 220,1081,374,911,176,105,1296, 0,880,2530,3014,4031,4470,4752, +3R 909775 912749 CG2530.a 31 - 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