Mercurial > repos > vipints > fml_gff3togtf
view fml_gff_converter_programs/t/UCSC_transcripts.gtf @ 0:ed53dca1c6ff
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
| author | vipints |
|---|---|
| date | Tue, 07 Jun 2011 17:26:20 -0400 |
| parents | |
| children |
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chr1 hg19_ccdsGene start_codon 861322 861324 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 861322 861393 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 861322 861393 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 865535 865716 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 865535 865716 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 866419 866469 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 866419 866469 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 871152 871276 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 871152 871276 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 874420 874509 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 874420 874509 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 874655 874840 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 874655 874840 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 876524 876686 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 876524 876686 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 877516 877631 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 877516 877631 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 877790 877868 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 877790 877868 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 877939 878438 0.000000 + 1 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 877939 878438 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 878633 878757 0.000000 + 2 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 878633 878757 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 879078 879188 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 879078 879188 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene CDS 879288 879530 0.000000 + 0 gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene stop_codon 879531 879533 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene exon 879288 879533 0.000000 + . gene_id "CCDS2.2"; transcript_id "CCDS2.2"; chr1 hg19_ccdsGene stop_codon 880074 880076 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 880077 880180 0.000000 - 2 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 880074 880180 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 880437 880526 0.000000 - 2 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 880437 880526 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 880898 881033 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 880898 881033 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 881553 881666 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 881553 881666 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 881782 881925 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 881782 881925 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 883511 883612 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 883511 883612 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 883870 883983 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 883870 883983 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 886507 886618 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 886507 886618 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 887380 887519 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 887380 887519 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 887792 887980 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 887792 887980 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 888555 888668 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 888555 888668 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 889162 889272 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 889162 889272 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 889384 889462 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 889384 889462 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 891303 891393 0.000000 - 2 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 891303 891393 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 891475 891595 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 891475 891595 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 892274 892405 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 892274 892405 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 892479 892653 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 892479 892653 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 894309 894461 0.000000 - 1 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 894309 894461 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene CDS 894595 894620 0.000000 - 0 gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene start_codon 894618 894620 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene exon 894595 894620 0.000000 - . gene_id "CCDS3.1"; transcript_id "CCDS3.1"; chr1 hg19_ccdsGene start_codon 896074 896076 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 896074 896180 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 896074 896180 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 896673 896932 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 896673 896932 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 897009 897130 0.000000 + 2 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 897009 897130 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 897206 897427 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 897206 897427 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 897735 897851 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 897735 897851 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 898084 898297 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 898084 898297 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 898489 898633 0.000000 + 2 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 898489 898633 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 898717 898884 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 898717 898884 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 899300 899388 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 899300 899388 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 899487 899560 0.000000 + 2 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 899487 899560 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 899729 899910 0.000000 + 0 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 899729 899910 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene CDS 900343 900568 0.000000 + 1 gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene stop_codon 900569 900571 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene exon 900343 900571 0.000000 + . gene_id "CCDS30550.1"; transcript_id "CCDS30550.1"; chr1 hg19_ccdsGene start_codon 901912 901914 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 901912 901994 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 901912 901994 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 902084 902183 0.000000 + 1 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 902084 902183 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 905657 905803 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 905657 905803 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 905901 905981 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 905901 905981 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 906066 906138 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 906066 906138 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 906259 906386 0.000000 + 2 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 906259 906386 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 906493 906588 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 906493 906588 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 906704 906784 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 906704 906784 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 907455 907530 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 907455 907530 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 907668 907804 0.000000 + 2 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 907668 907804 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 908241 908390 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 908241 908390 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 908566 908706 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 908566 908706 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 908880 909020 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 908880 909020 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 909213 909431 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 909213 909431 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 909696 909744 0.000000 + 0 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 909696 909744 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene CDS 909822 909952 0.000000 + 2 gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene stop_codon 909953 909955 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1"; chr1 hg19_ccdsGene exon 909822 909955 0.000000 + . gene_id "CCDS4.1"; transcript_id "CCDS4.1";