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comparison fml_gff_groomer/t/GFF_2_Source.gff3 @ 0:79726c328621 default tip

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Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author vipints
date Tue, 07 Jun 2011 17:29:24 -0400
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comparison
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-1:000000000000 0:79726c328621
1 ##gff-version 3
2 1 gencode gene 11874 14412 . + . ID=Gene:gene:ENSG00000223972;Name=Gene:gene:ENSG00000223972
3 1 gencode mRNA 11874 14412 . + . ID=Transcript:gene:ENSG00000223972.1;Parent=Gene:gene:ENSG00000223972;prediction_status=Predicted
4 1 gencode five_prime_UTR 11874 12227 . + . ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
5 1 gencode five_prime_UTR 12613 12721 . + . ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
6 1 gencode five_prime_UTR 13221 14158 . + . ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
7 1 gencode CDS 14159 14389 . + 0 ID=CDS:gene:ENSG00000223972.1;Name=CDS:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
8 1 gencode three_prime_UTR 14390 14412 . + . ID=three_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
9 1 gencode exon 11874 12227 . + . ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
10 1 gencode exon 12613 12721 . + . ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
11 1 gencode exon 13221 14412 . + . ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1
12 1 gencode mRNA 12010 13670 . + . ID=Transcript:gene:ENSG00000223972.2;Parent=Gene:gene:ENSG00000223972;prediction_status=Predicted
13 1 gencode exon 12010 12057 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
14 1 gencode exon 12179 12227 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
15 1 gencode exon 12613 12697 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
16 1 gencode exon 12975 13052 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
17 1 gencode exon 13221 13374 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
18 1 gencode exon 13453 13670 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2
19 scaffold_1 JGI_Filtered gene 47 2523 . - . ID=scaffold_100001.1;Name=scaffold_100001.1
20 scaffold_1 JGI_Filtered mRNA 47 2523 . - . ID=Transcript:918720;Name=Transcript:918720;Parent=scaffold_100001.1
21 scaffold_1 JGI_Filtered three_prime_UTR 47 66 . - . ID=three_prime_UTR:918720;Parent=Transcript:918720
22 scaffold_1 JGI_Filtered exon 47 252 . - . ID=exon:918720;Parent=Transcript:918720
23 scaffold_1 JGI_Filtered CDS 67 252 . - 0 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
24 scaffold_1 JGI_Filtered exon 407 782 . - . ID=exon:918720;Parent=Transcript:918720
25 scaffold_1 JGI_Filtered CDS 407 782 . - 0 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
26 scaffold_1 JGI_Filtered exon 1423 1642 . - . ID=exon:918720;Parent=Transcript:918720
27 scaffold_1 JGI_Filtered CDS 1423 1642 . - 1 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
28 scaffold_1 JGI_Filtered exon 1803 2035 . - . ID=exon:918720;Parent=Transcript:918720
29 scaffold_1 JGI_Filtered CDS 1803 2035 . - 2 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
30 scaffold_1 JGI_Filtered exon 2124 2347 . - . ID=exon:918720;Parent=Transcript:918720
31 scaffold_1 JGI_Filtered CDS 2124 2347 . - 1 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
32 scaffold_1 JGI_Filtered exon 2444 2523 . - . ID=exon:918720;Parent=Transcript:918720
33 scaffold_1 JGI_Filtered CDS 2444 2503 . - 0 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1
34 scaffold_1 JGI_Filtered five_prime_UTR 2504 2523 . - . ID=five_prime_UTR:918720;Parent=Transcript:918720