Mercurial > repos > vipints > fml_mergeloci
diff fml_gff_groomer/t/GFF_2_Source.gff3 @ 0:79726c328621 default tip
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
| author | vipints |
|---|---|
| date | Tue, 07 Jun 2011 17:29:24 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fml_gff_groomer/t/GFF_2_Source.gff3 Tue Jun 07 17:29:24 2011 -0400 @@ -0,0 +1,34 @@ +##gff-version 3 +1 gencode gene 11874 14412 . + . ID=Gene:gene:ENSG00000223972;Name=Gene:gene:ENSG00000223972 +1 gencode mRNA 11874 14412 . + . ID=Transcript:gene:ENSG00000223972.1;Parent=Gene:gene:ENSG00000223972;prediction_status=Predicted +1 gencode five_prime_UTR 11874 12227 . + . ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1 +1 gencode five_prime_UTR 12613 12721 . + . ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1 +1 gencode five_prime_UTR 13221 14158 . + . ID=five_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1 +1 gencode CDS 14159 14389 . + 0 ID=CDS:gene:ENSG00000223972.1;Name=CDS:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1 +1 gencode three_prime_UTR 14390 14412 . + . ID=three_prime_UTR:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1 +1 gencode exon 11874 12227 . + . ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1 +1 gencode exon 12613 12721 . + . ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1 +1 gencode exon 13221 14412 . + . ID=exon:gene:ENSG00000223972.1;Parent=Transcript:gene:ENSG00000223972.1 +1 gencode mRNA 12010 13670 . + . ID=Transcript:gene:ENSG00000223972.2;Parent=Gene:gene:ENSG00000223972;prediction_status=Predicted +1 gencode exon 12010 12057 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2 +1 gencode exon 12179 12227 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2 +1 gencode exon 12613 12697 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2 +1 gencode exon 12975 13052 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2 +1 gencode exon 13221 13374 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2 +1 gencode exon 13453 13670 . + . ID=exon:gene:ENSG00000223972.2;Parent=Transcript:gene:ENSG00000223972.2 +scaffold_1 JGI_Filtered gene 47 2523 . - . ID=scaffold_100001.1;Name=scaffold_100001.1 +scaffold_1 JGI_Filtered mRNA 47 2523 . - . ID=Transcript:918720;Name=Transcript:918720;Parent=scaffold_100001.1 +scaffold_1 JGI_Filtered three_prime_UTR 47 66 . - . ID=three_prime_UTR:918720;Parent=Transcript:918720 +scaffold_1 JGI_Filtered exon 47 252 . - . ID=exon:918720;Parent=Transcript:918720 +scaffold_1 JGI_Filtered CDS 67 252 . - 0 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1 +scaffold_1 JGI_Filtered exon 407 782 . - . ID=exon:918720;Parent=Transcript:918720 +scaffold_1 JGI_Filtered CDS 407 782 . - 0 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1 +scaffold_1 JGI_Filtered exon 1423 1642 . - . ID=exon:918720;Parent=Transcript:918720 +scaffold_1 JGI_Filtered CDS 1423 1642 . - 1 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1 +scaffold_1 JGI_Filtered exon 1803 2035 . - . ID=exon:918720;Parent=Transcript:918720 +scaffold_1 JGI_Filtered CDS 1803 2035 . - 2 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1 +scaffold_1 JGI_Filtered exon 2124 2347 . - . ID=exon:918720;Parent=Transcript:918720 +scaffold_1 JGI_Filtered CDS 2124 2347 . - 1 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1 +scaffold_1 JGI_Filtered exon 2444 2523 . - . ID=exon:918720;Parent=Transcript:918720 +scaffold_1 JGI_Filtered CDS 2444 2503 . - 0 ID=CDS:918720;Parent=Transcript:918720;Name=scaffold_100001.1 +scaffold_1 JGI_Filtered five_prime_UTR 2504 2523 . - . ID=five_prime_UTR:918720;Parent=Transcript:918720