Mercurial > repos > vipints > fml_wig2bed

comparison Wig_to_bedGraph/README @ 0:45f3fa82369f default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.0.0 from old tool shed archive to new tool shed repository
author vipints
date Tue, 07 Jun 2011 18:08:31 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:45f3fa82369f
1 INTRODUCTION
2
3 A tool for converting data in wiggle fixedStep or variableStep format to four column bedGraph format
4
5 CONTENTS
6
7 galaxy: Contains tool configuration file in *.xml format.
8
9 Wig2bedGraph.xml
10
11 t: Test data set. (move to your galaxy root folder/test-data/)
12
13 You may need to move the test files into your test-data directory so galaxy can find them.
14 If you want to run the functional tests eg as:
15
16 sh run_functional_tests.sh -id fml_wig2bed
17
18 script: Perl based script.
19
20 wig2bedGraph_converter.pl: Read data in wiggle fixedStep and variableStep and convert to bedGraph format.
21
22 REQUIREMENTS
23
24 Perl
25
26 COMMENTS/QUESTIONS
27
28 I can be reached at vipin.ts@tuebingen.mpg.de
29
30 LICENSE
31
32 Copyright (C) 2010 Friedrich Miescher Laboratory of the Max Planck Society
33
34 This program is free software; you can redistribute it and/or modify
35 it under the terms of the GNU General Public License as published by
36 the Free Software Foundation; either version 3 of the License, or
37 (at your option) any later version.
38
39 COURTESY
40
41 Galaxy Team.