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1 include ../bin/rdiff_config.sh
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2
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3 all: get_reads.mex interval_overlap.mex get_reads.mexa64 interval_overlap.mexa64
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4 octave: get_reads.mex interval_overlap.mex
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5 matlab: get_reads.mexa64 interval_overlap.mexa64
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6
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7
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8 get_reads.mexa64: get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp
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9 rm -f *.o
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10 ${MATLAB_MEX_PATH} -g -O get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp -I${RDIFF_SAMTOOLS_INCLUDE_DIR} -L${RDIFF_SAMTOOLS_LIB_DIR} -lbam -lz -lcurses -I$(RDIFF_MATLAB_INCLUDE_DIR)
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11
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12 interval_overlap.mexa64: interval_overlap.cpp
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13 ${MATLAB_MEX_PATH} -g -O interval_overlap.cpp -I$(RDIFF_MATLAB_INCLUDE_DIR)
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14
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15 get_reads.mex: get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp
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16 rm -f *.o
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17 ${RDIFF_OCTAVE_MKOCT} -g --mex get_reads.cpp get_reads_direct.cpp mex_input.cpp read.cpp -I${RDIFF_SAMTOOLS_INCLUDE_DIR} -L${RDIFF_SAMTOOLS_LIB_DIR} -lbam -lz -lcurses
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18
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19 interval_overlap.mex: interval_overlap.cpp
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20 rm -f *.o
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21 ${RDIFF_OCTAVE_MKOCT} -g --mex interval_overlap.cpp
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22
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23 clean:
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24 rm -f *.o *.mexa64 *.mex
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