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1 To setup rDiff, please follow these steps:
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2
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3 1) Download the SAMTools (version 0.1.7) from http://samtools.sourceforge.net/
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4 and install it. You need to add the flag -fPIC in the SAMTools Makefile for compilation.
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5
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6 2) Change to directory that contains rDiff and configure rDiff by typing:
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7
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8 ./configure
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9
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10 this etects and stores paths of dependencies necessary to compile and run rDiff.
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11 You can also set these variables manually using the interactive configuration:
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12
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13 ./configure -i
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14
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15 3) To compile rDiff, type:
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16
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17 make
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18
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19 4) When successfully completed, rDiff is usable. Check out the <Examples>:
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20
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21 make example
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22
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23 This will download an example dataset and run the rDiff.parametric on it.
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24 You can also run rDiff.parametric, rDiff.nonparametric or rDiff.poisson by typing:
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25
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26 make more_examples
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