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1 #!/bin/bash
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2
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3 set -e
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4
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5 echo %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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6 echo % rDiff examples: get_data.sh %
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7 echo %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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8 echo
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9 echo This script gets reads and the genome sequence
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10 echo for one A.thaliana example.
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11 echo
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12
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13 export DATA_DIR=data
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14
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15 if [ -d $DATA_DIR ]
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16 then
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17 echo Data directory ./$DATA_DIR already exists
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18 echo \(remove it to run this script again\)
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19 exit -1
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20 fi
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21
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22 echo Downloading rDiff example data from FTP server ...
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23 wget -c http://cbio.mskcc.org/public/raetschlab/user/drewe/rdiff/example_data.tar.gz
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24 echo uncompressing ...
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25 tar -xzf example_data.tar.gz
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26 mv example_data $DATA_DIR
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27 echo
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28 echo -n Done.
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29 echo
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